This repository provides all shell and R commands used to process / analyze low coverage whole genome resequence (lcWGR) and pool-seq data in:

Black AN, Heenkenda EJ, Mathur S, Willoughby JR, Pierce BL, Turner SJ, Rizzuto D, DeWoody JA. Rapid vertebrate speciation via isolation, bottlenecks, and drift. Proc Natl Acad Sci U S A. 2024 May 28;121(22):e2320040121. doi: 10.1073/pnas.2320040121. Epub 2024 May 21. PMID: 38771882.