The shell and R code contained in the repository were used for the following publication:

Black, A. N., Willoughby, J. R., Brüniche‐Olsen, A., Pierce, B. L., & DeWoody, J. A. (2021). The endangered White Sands pupfish (Cyprinodon tularosa) genome reveals low diversity and heterogenous patterns of differentiation. Molecular Ecology Resources, 21(7), 2520-2532. https://doi.org/10.1111/1755-0998.13447