This repository provides all shell and R commands used to process / analyze Genotyping By Sequencing of speckled dace in the following publication:

Sidlauskas, B.L., Mathur, S., Aydoğan, H. et al. Genetic approaches reveal a healthy population and an unexpectedly recent origin for an isolated desert spring fish. BMC Ecol Evo 24, 2 (2024). https://doi.org/10.1186/s12862-023-02191-1