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Skip blank lines in the reads file #31

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Skip blank lines in the reads file #31

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20 changes: 10 additions & 10 deletions METABOLIC-C.pl
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Original file line number Diff line number Diff line change
Expand Up @@ -1775,17 +1775,17 @@ sub _get_Genome_coverge{
open __IN, "$reads";
while (<__IN>){
chomp;
if (!/^#/){
my @tmp = split (/\,/,$_);
my $tmp_link = "";
if ($test ne "true"){
$tmp_link = $tmp[0]."\t".$tmp[1];
}else{
$tmp_link = "$METABOLIC_dir/METABOLIC_test_files/METABOLIC_test_reads/".$tmp[0]."\t"."$METABOLIC_dir/METABOLIC_test_files/METABOLIC_test_reads/".$tmp[1];
}
$Reads{$tmp_link} = $i;
$i++;
next if /^#/ or /^\s*$/; # Skip comments and blank lines

my @tmp = split /,/;
my $tmp_link = "";
if ($test ne "true"){
$tmp_link = $tmp[0]."\t".$tmp[1];
}else{
$tmp_link = "$METABOLIC_dir/METABOLIC_test_files/METABOLIC_test_reads/".$tmp[0]."\t"."$METABOLIC_dir/METABOLIC_test_files/METABOLIC_test_reads/".$tmp[1];
}
$Reads{$tmp_link} = $i;
$i++;
}
close __IN;

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