added cmake files

CMakeLists.txt

@@ -0,0 +1,55 @@
+cmake_minimum_required(VERSION 2.8.8)
+
+set(PROJECT_NAME_STR tinge)
+PROJECT(${PROJECT_NAME_STR} C CXX)
+#TODO CHANGE THIS OPTION
+set(CMAKE_VERBOSE_MAKEFILE ON)
+# set(CMAKE_BUILD_TYPE Debug)
+set(CMAKE_BUILD_TYPE Release)
+
+find_package(Threads REQUIRED)
+
+# flags
+set(CMAKE_CXX_FLAGS                "-Wall -std=c++11")
+set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -std=c++11 -g")
+set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -Wall -std=c++11")
+
+# include jaz and mpix
+include_directories("${PROJECT_SOURCE_DIR}/")
+include_directories("${PROJECT_SOURCE_DIR}/src/")
+
+#
+# add MPI includes and libraries
+find_package(MPI REQUIRED)
+include_directories(${MPI_INCLUDE_PATH})
+message(STATUS "Found MPI:")
+message(STATUS "    headers: ${MPI_INCLUDE_PATH}")
+message(STATUS "    libs:    ${MPI_LIBRARIES}")
+message(STATUS "    link flags: ${MPI_LINK_FLAGS}")
+set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${MPI_COMPILE_FLAGS}")
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${MPI_COMPILE_FLAGS}")
+set(CMAKE_LINK_FLAGS "${CMAKE_LINK_FLAGS} ${MPI_LINK_FLAGS}")
+
+# Compile
+set(PROJECT_EXEC ${PROJECT_NAME_STR}-mi)
+ADD_EXECUTABLE(${PROJECT_EXEC} 
+               src/main.cxx
+               src/adj_build.cpp
+               src/iomanip.cpp
+               src/read_adj.cpp
+               src/read_exp.cpp
+               src/read_tfs.cpp
+               src/transform_data.cpp
+               src/write_adj.cpp
+               src/write_lab.cpp)
+# Link MPI library
+target_link_libraries(${PROJECT_EXEC} "${MPI_LIBRARIES}")
+
+# Compile
+ADD_EXECUTABLE(residuals
+               tools/residuals.cxx 
+               src/iomanip.cpp
+               src/read_exp.cpp)
+target_link_libraries(residuals "${MPI_LIBRARIES}")
+
+