Add error handling to address #62. (#65)

gatox/cli/cli.py

@@ -337,8 +337,14 @@ def enumerate(args, parser):
     exec_wrapper.add_organizations(orgs)
     exec_wrapper.add_repositories(repos)
 
-    if args.output_json:
-        Output.write_json(exec_wrapper, args.output_json)
+    try:
+
+        if args.output_json:
+            Output.write_json(exec_wrapper, args.output_json)
+    except Exception as output_error:
+        Output.error(
+            "Encountered an error writing the output JSON, this is likely a Gato-X bug."
+        )
 
 
 def search(args, parser):

gatox/models/execution.py

@@ -52,10 +52,14 @@ def toJSON(self):
                 "enumeration": {
                     "timestamp": self.timestamp.ctime(),
                     "organizations": [
-                        organization.toJSON() for organization in self.organizations
+                        organization.toJSON()
+                        for organization in self.organizations
+                        if isinstance(organization, Organization)
                     ],
                     "repositories": [
-                        repository.toJSON() for repository in self.repositories
+                        organization.toJSON()
+                        for organization in self.organizations
+                        if isinstance(organization, Repository)
                     ],
                 },
             }