Update for Fall 2024

AdamWilsonLabEDU · Aug 15, 2024 · 303552d · 303552d
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diff --git a/CS_10.Rmd b/CS_10.Rmd
@@ -31,7 +31,6 @@ md_bullet(rmarkdown::metadata$tasks)
 ```{r,results='hide',message=FALSE, warning=F}
 library(raster)
 library(rasterVis)
-library(rgdal)
 library(ggmap)
 library(tidyverse)
 library(knitr)

diff --git a/DataCamp.Rmd b/DataCamp.Rmd
@@ -2,7 +2,7 @@
 title: ""
 ---
 ```{r, echo=F}
-datacampurl="https://app.datacamp.com/groups/2022-geo-511-spatial-data-science"
+datacampurl="https://app.datacamp.com/groups/2024-spatial-data-science-geo511"
 ```
 <a  href="http://datacamp.com"> <img src="img/DataCamp_logo.png" width=50% ></img></a>
 

diff --git a/Syllabus.Rmd b/Syllabus.Rmd
@@ -122,7 +122,7 @@ glevel %>%
 
 #### Coding Challenge
 
-Near the end of the semester, you will be asked to complete a coding assessment via DataCamp.   It is an _adaptive assessment tool that measures your data science skill level in R_. The assessment will take about 10 minutes to complete (if you succeed the first time). After completing the assessment, you will receive an assessment score and percentile ranking, your skill level, an overview of your strengths and skill gaps, and personalized course recommendations for areas of improvement.
+Near the end of the semester, you may be asked to complete a coding assessment via DataCamp.   It is an _adaptive assessment tool that measures your data science skill level in R_. The assessment will take about 10 minutes to complete (if you succeed the first time). After completing the assessment, you will receive an assessment score and percentile ranking, your skill level, an overview of your strengths and skill gaps, and personalized course recommendations for areas of improvement.
 
 1. **To pass the challenge, you must achieve a score of 70 or greater on the assessment. You may take it multiple times until you achieve this score.**
 2. Failure to pass the challenge (70+) will lower your grade 1-2 steps from the grade earned via your [completed tasks](Syllabus.html).

diff --git a/docs/.nojekyll b/docs/.nojekyll
diff --git a/docs/00_CourseIntroductionFrame.html b/docs/00_CourseIntroductionFrame.html
@@ -13,7 +13,7 @@
 
 <title>Course Introduction</title>
 
-<script src="site_libs/header-attrs-2.14/header-attrs.js"></script>
+<script src="site_libs/header-attrs-2.27/header-attrs.js"></script>
 <script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
 <link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
@@ -29,14 +29,14 @@
        h6 {font-size: 12px;}
        code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
        pre:not([class]) { background-color: white }</style>
-<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
+<script src="site_libs/jqueryui-1.13.2/jquery-ui.min.js"></script>
 <link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
 <script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
-<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
 
 <style type="text/css">
   code{white-space: pre-wrap;}
@@ -148,11 +148,15 @@
     href = "index.html";
   var menuAnchor = $('a[href="' + href + '"]');
 
-  // mark it active
-  menuAnchor.tab('show');
-
-  // if it's got a parent navbar menu mark it active as well
-  menuAnchor.closest('li.dropdown').addClass('active');
+  // mark the anchor link active (and if it's in a dropdown, also mark that active)
+  var dropdown = menuAnchor.closest('li.dropdown');
+  if (window.bootstrap) { // Bootstrap 4+
+    menuAnchor.addClass('active');
+    dropdown.find('> .dropdown-toggle').addClass('active');
+  } else { // Bootstrap 3
+    menuAnchor.parent().addClass('active');
+    dropdown.addClass('active');
+  }
 
   // Navbar adjustments
   var navHeight = $(".navbar").first().height() + 15;
@@ -181,25 +185,18 @@
   border-radius: 4px;
 }
 
-.tabset-dropdown > .nav-tabs > li.active:before {
-  content: "";
+.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
+  content: "\e259";
   font-family: 'Glyphicons Halflings';
   display: inline-block;
   padding: 10px;
   border-right: 1px solid #ddd;
 }
 
 .tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
-  content: "&#xe258;";
-  border: none;
-}
-
-.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
-  content: "";
+  content: "\e258";
   font-family: 'Glyphicons Halflings';
-  display: inline-block;
-  padding: 10px;
-  border-right: 1px solid #ddd;
+  border: none;
 }
 
 .tabset-dropdown > .nav-tabs > li.active {

diff --git a/docs/01_Rintro.html b/docs/01_Rintro.html
@@ -13,7 +13,7 @@
 
 <title>Introduction to R</title>
 
-<script src="site_libs/header-attrs-2.14/header-attrs.js"></script>
+<script src="site_libs/header-attrs-2.27/header-attrs.js"></script>
 <script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
 <link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
@@ -29,14 +29,14 @@
        h6 {font-size: 12px;}
        code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
        pre:not([class]) { background-color: white }</style>
-<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
+<script src="site_libs/jqueryui-1.13.2/jquery-ui.min.js"></script>
 <link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
 <script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
-<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
 
 <style type="text/css">
   code{white-space: pre-wrap;}
@@ -148,11 +148,15 @@
     href = "index.html";
   var menuAnchor = $('a[href="' + href + '"]');
 
-  // mark it active
-  menuAnchor.tab('show');
-
-  // if it's got a parent navbar menu mark it active as well
-  menuAnchor.closest('li.dropdown').addClass('active');
+  // mark the anchor link active (and if it's in a dropdown, also mark that active)
+  var dropdown = menuAnchor.closest('li.dropdown');
+  if (window.bootstrap) { // Bootstrap 4+
+    menuAnchor.addClass('active');
+    dropdown.find('> .dropdown-toggle').addClass('active');
+  } else { // Bootstrap 3
+    menuAnchor.parent().addClass('active');
+    dropdown.addClass('active');
+  }
 
   // Navbar adjustments
   var navHeight = $(".navbar").first().height() + 15;
@@ -181,25 +185,18 @@
   border-radius: 4px;
 }
 
-.tabset-dropdown > .nav-tabs > li.active:before {
-  content: "";
+.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
+  content: "\e259";
   font-family: 'Glyphicons Halflings';
   display: inline-block;
   padding: 10px;
   border-right: 1px solid #ddd;
 }
 
 .tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
-  content: "&#xe258;";
-  border: none;
-}
-
-.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
-  content: "";
+  content: "\e258";
   font-family: 'Glyphicons Halflings';
-  display: inline-block;
-  padding: 10px;
-  border-right: 1px solid #ddd;
+  border: none;
 }
 
 .tabset-dropdown > .nav-tabs > li.active {
@@ -483,10 +480,10 @@ <h1>Using Functions</h1>
 <p><code>mean(x, trim = 0, na.rm = FALSE, ...)</code></p>
 <p>In RStudio, if you press <code>TAB</code> after a function name (such
 as <code>mean(</code>), it will show function arguments.</p>
-<div class="figure">
+<div class="float">
 <img src="img/autocomplete.png" title="Autocomplete Screenshot"
-alt="" />
-<p class="caption">Autocomplete screenshot</p>
+alt="Autocomplete screenshot" />
+<div class="figcaption">Autocomplete screenshot</div>
 </div>
 <div class="well">
 <p>Calculate the standard deviation of <code>c(3,6,12,89)</code>.</p>

diff --git a/docs/CS_01.html b/docs/CS_01.html
@@ -13,7 +13,7 @@
 
 <title>Your first script</title>
 
-<script src="site_libs/header-attrs-2.14/header-attrs.js"></script>
+<script src="site_libs/header-attrs-2.27/header-attrs.js"></script>
 <script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
 <link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
@@ -29,16 +29,16 @@
        h6 {font-size: 12px;}
        code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
        pre:not([class]) { background-color: white }</style>
-<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
+<script src="site_libs/jqueryui-1.13.2/jquery-ui.min.js"></script>
 <link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
 <script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
 <script src="site_libs/kePrint-0.0.1/kePrint.js"></script>
 <link href="site_libs/lightable-0.0.1/lightable.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
 
 <style type="text/css">
   code{white-space: pre-wrap;}
@@ -150,11 +150,15 @@
     href = "index.html";
   var menuAnchor = $('a[href="' + href + '"]');
 
-  // mark it active
-  menuAnchor.tab('show');
-
-  // if it's got a parent navbar menu mark it active as well
-  menuAnchor.closest('li.dropdown').addClass('active');
+  // mark the anchor link active (and if it's in a dropdown, also mark that active)
+  var dropdown = menuAnchor.closest('li.dropdown');
+  if (window.bootstrap) { // Bootstrap 4+
+    menuAnchor.addClass('active');
+    dropdown.find('> .dropdown-toggle').addClass('active');
+  } else { // Bootstrap 3
+    menuAnchor.parent().addClass('active');
+    dropdown.addClass('active');
+  }
 
   // Navbar adjustments
   var navHeight = $(".navbar").first().height() + 15;
@@ -183,25 +187,18 @@
   border-radius: 4px;
 }
 
-.tabset-dropdown > .nav-tabs > li.active:before {
-  content: "";
+.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
+  content: "\e259";
   font-family: 'Glyphicons Halflings';
   display: inline-block;
   padding: 10px;
   border-right: 1px solid #ddd;
 }
 
 .tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
-  content: "&#xe258;";
-  border: none;
-}
-
-.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
-  content: "";
+  content: "\e258";
   font-family: 'Glyphicons Halflings';
-  display: inline-block;
-  padding: 10px;
-  border-right: 1px solid #ddd;
+  border: none;
 }
 
 .tabset-dropdown > .nav-tabs > li.active {

diff --git a/docs/CS_02.html b/docs/CS_02.html
@@ -13,7 +13,7 @@
 
 <title>My grandfather says summers are getting hotter</title>
 
-<script src="site_libs/header-attrs-2.14/header-attrs.js"></script>
+<script src="site_libs/header-attrs-2.27/header-attrs.js"></script>
 <script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
 <link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
@@ -29,14 +29,14 @@
        h6 {font-size: 12px;}
        code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
        pre:not([class]) { background-color: white }</style>
-<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
+<script src="site_libs/jqueryui-1.13.2/jquery-ui.min.js"></script>
 <link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
 <script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
-<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
 
 <style type="text/css">
   code{white-space: pre-wrap;}
@@ -148,11 +148,15 @@
     href = "index.html";
   var menuAnchor = $('a[href="' + href + '"]');
 
-  // mark it active
-  menuAnchor.tab('show');
-
-  // if it's got a parent navbar menu mark it active as well
-  menuAnchor.closest('li.dropdown').addClass('active');
+  // mark the anchor link active (and if it's in a dropdown, also mark that active)
+  var dropdown = menuAnchor.closest('li.dropdown');
+  if (window.bootstrap) { // Bootstrap 4+
+    menuAnchor.addClass('active');
+    dropdown.find('> .dropdown-toggle').addClass('active');
+  } else { // Bootstrap 3
+    menuAnchor.parent().addClass('active');
+    dropdown.addClass('active');
+  }
 
   // Navbar adjustments
   var navHeight = $(".navbar").first().height() + 15;
@@ -181,25 +185,18 @@
   border-radius: 4px;
 }
 
-.tabset-dropdown > .nav-tabs > li.active:before {
-  content: "";
+.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
+  content: "\e259";
   font-family: 'Glyphicons Halflings';
   display: inline-block;
   padding: 10px;
   border-right: 1px solid #ddd;
 }
 
 .tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
-  content: "&#xe258;";
-  border: none;
-}
-
-.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
-  content: "";
+  content: "\e258";
   font-family: 'Glyphicons Halflings';
-  display: inline-block;
-  padding: 10px;
-  border-right: 1px solid #ddd;
+  border: none;
 }
 
 .tabset-dropdown > .nav-tabs > li.active {