range_reconstruction_PMMA_phantom

We want to reconstruct the air cavity size in a PMMA phantom based on timing and energy information of prompt gammas.

Usage

Installation

First, create a (conda) virtual environment like this:

conda create -n pmma python=3.8

Install the required libraries and pmma package

conda activate pmma
cd scripts
pip install -r requirements.txt
pip install -e .

Adjust config file and setup experiment:

nano project_pipeline/config.yaml

Submit batch job to excute experiment

sbatch project_pipeline/execute_snakefile.sh