bump version, merge pull request #42 from AMYPAD/clean-api

AMYPAD · Feb 26, 2024 · b9a12bd · b9a12bd
2 parents 3ff22d6 + 7f95eaf
commit b9a12bd
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Showing 27 changed files with 333 additions and 294 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -3,6 +3,7 @@ on:
   push:
   pull_request:
   schedule: [{cron: '30 23 * * 6'}]  # M H d m w (Sat at 23:30)
+  workflow_dispatch:
 jobs:
   clang-format:
     if: github.event_name != 'pull_request' || !contains('OWNER,MEMBER,COLLABORATOR', github.event.pull_request.author_association)

diff --git a/.gitignore b/.gitignore
@@ -8,7 +8,7 @@ __pycache__/
 /cuvec-*.dist-info/
 /cuvec/*PYTHON_wrap.cxx
 /cuvec/example_swig.py
-/cuvec/swvec.py
+/cuvec/cuvec_swig.py
 /dist/
 /build/
 /docs/build/

diff --git a/Makefile b/Makefile
@@ -2,9 +2,10 @@
 # since `-e .` doesn't work yet (https://github.com/scikit-build/scikit-build-core/issues/114).
 # Instead, do `make deps-build build-editable deps-run`
 CUVEC_DEBUG=0
+BUILD_TYPE=RelWithDebInfo
 CXX_FLAGS=-Wall -Wextra -Wpedantic -Werror -Wno-missing-field-initializers -Wno-unused-parameter -Wno-cast-function-type
 CUDA_ARCHITECTURES=native
-BUILD_CMAKE_FLAGS=-Ccmake.define.CUVEC_DEBUG=$(CUVEC_DEBUG) -Ccmake.define.CMAKE_CXX_FLAGS="$(CXX_FLAGS)" -Ccmake.define.CMAKE_CUDA_ARCHITECTURES=$(CUDA_ARCHITECTURES)
+BUILD_CMAKE_FLAGS=-Ccmake.define.CUVEC_DEBUG=$(CUVEC_DEBUG) -Ccmake.define.CMAKE_BUILD_TYPE=$(BUILD_TYPE) -Ccmake.define.CMAKE_CXX_FLAGS="$(CXX_FLAGS)" -Ccmake.define.CMAKE_CUDA_ARCHITECTURES=$(CUDA_ARCHITECTURES)
 CCACHE=
 ifneq ($(CCACHE),)
 	BUILD_CMAKE_FLAGS+= -Ccmake.define.CMAKE_CXX_COMPILER_LAUNCHER=ccache

diff --git a/cuvec/CMakeLists.txt b/cuvec/CMakeLists.txt
@@ -43,7 +43,7 @@ cmake_policy(POP)
 
 message(STATUS "CUDA architectures: ${CMAKE_CUDA_ARCHITECTURES}")
 if(NOT DEFINED CMAKE_BUILD_TYPE)
-  set(CMAKE_BUILD_TYPE Release CACHE STRING "Build type" FORCE)
+  set(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING "Build type" FORCE)
 endif()
 message(STATUS "Build type: ${CMAKE_BUILD_TYPE}")
 
@@ -97,16 +97,15 @@ if(pybind11_FOUND AND SKBUILD)
   file(GLOB SRC LIST_DIRECTORIES false "src/pybind11*.cu")
   # include_directories(src)
   # include_directories(${Python_INCLUDE_DIRS})
-  python_add_library(${PROJECT_NAME}_pybind11 MODULE WITH_SOABI ${SRC})
+  pybind11_add_module(${PROJECT_NAME}_pybind11 MODULE WITH_SOABI ${SRC})
   add_library(AMYPAD::${PROJECT_NAME}_pybind11 ALIAS ${PROJECT_NAME}_pybind11)
   target_include_directories(${PROJECT_NAME}_pybind11 PUBLIC
     "$<BUILD_INTERFACE:${${CMAKE_PROJECT_NAME}_INCLUDE_DIRS}>"
     "$<INSTALL_INTERFACE:${CMAKE_PROJECT_NAME}/include>")
   if(CUDAToolkit_FOUND)
-    target_link_libraries(${PROJECT_NAME}_pybind11 PRIVATE pybind11::headers CUDA::cudart_static)
+    target_link_libraries(${PROJECT_NAME}_pybind11 PRIVATE CUDA::cudart_static)
   else()
     set_source_files_properties(${SRC} PROPERTIES LANGUAGE CXX)
-    target_link_libraries(${PROJECT_NAME}_pybind11 PRIVATE pybind11::headers)
   endif()
 
   set_target_properties(${PROJECT_NAME}_pybind11 PROPERTIES
@@ -124,32 +123,32 @@ endif()
 if(SWIG_FOUND AND SKBUILD)
   if(CUDAToolkit_FOUND)
     include_directories(${CUDAToolkit_INCLUDE_DIRS})
-    set_source_files_properties(src/swvec.i PROPERTIES COMPILE_DEFINITIONS _CUVEC_HALF=__half)
+    set_source_files_properties(src/cuvec_swig.i PROPERTIES COMPILE_DEFINITIONS _CUVEC_HALF=__half)
   endif()
-  set_source_files_properties(src/swvec.i PROPERTIES CPLUSPLUS ON)
-  set_source_files_properties(src/swvec.i PROPERTIES USE_TARGET_INCLUDE_DIRECTORIES ON)
-  swig_add_library(swvec LANGUAGE python
+  set_source_files_properties(src/cuvec_swig.i PROPERTIES CPLUSPLUS ON)
+  set_source_files_properties(src/cuvec_swig.i PROPERTIES USE_TARGET_INCLUDE_DIRECTORIES ON)
+  swig_add_library(${PROJECT_NAME}_swig LANGUAGE python
     OUTPUT_DIR "${SKBUILD_PLATLIB_DIR}/${CMAKE_PROJECT_NAME}"
-    SOURCES src/swvec.i)
+    SOURCES src/cuvec_swig.i)
   if(WIN32)
-    set_property(TARGET swvec PROPERTY SUFFIX ".${Python_SOABI}.pyd")
+    set_property(TARGET ${PROJECT_NAME}_swig PROPERTY SUFFIX ".${Python_SOABI}.pyd")
   else()
-    set_property(TARGET swvec PROPERTY SUFFIX ".${Python_SOABI}${CMAKE_SHARED_MODULE_SUFFIX}")
+    set_property(TARGET ${PROJECT_NAME}_swig PROPERTY SUFFIX ".${Python_SOABI}${CMAKE_SHARED_MODULE_SUFFIX}")
   endif()
   if(CUDAToolkit_FOUND)
-    target_link_libraries(swvec PRIVATE Python::Module CUDA::cudart_static)
+    target_link_libraries(${PROJECT_NAME}_swig PRIVATE Python::Module CUDA::cudart_static)
   else()
-    target_link_libraries(swvec PRIVATE Python::Module)
+    target_link_libraries(${PROJECT_NAME}_swig PRIVATE Python::Module)
   endif()
-  target_include_directories(swvec PUBLIC
+  target_include_directories(${PROJECT_NAME}_swig PUBLIC
     "$<BUILD_INTERFACE:${${CMAKE_PROJECT_NAME}_INCLUDE_DIRS}>"
     "$<INSTALL_INTERFACE:${CMAKE_PROJECT_NAME}/include>")
-  set_target_properties(swvec PROPERTIES
+  set_target_properties(${PROJECT_NAME}_swig PROPERTIES
     CXX_STANDARD 11
     VERSION ${CMAKE_PROJECT_VERSION} SOVERSION ${CMAKE_PROJECT_VERSION_MAJOR}
-    INTERFACE_swvec_MAJOR_VERSION ${CMAKE_PROJECT_VERSION_MAJOR})
-  set_property(TARGET swvec APPEND PROPERTY COMPATIBLE_INTERFACE_STRING swvec_MAJOR_VERSION)
-  install(TARGETS swvec
+    INTERFACE_${PROJECT_NAME}_swig_MAJOR_VERSION ${CMAKE_PROJECT_VERSION_MAJOR})
+  set_property(TARGET ${PROJECT_NAME}_swig APPEND PROPERTY COMPATIBLE_INTERFACE_STRING ${PROJECT_NAME}_swig_MAJOR_VERSION)
+  install(TARGETS ${PROJECT_NAME}_swig
     INCLUDES DESTINATION ${CMAKE_PROJECT_NAME}/include
     LIBRARY DESTINATION ${CMAKE_PROJECT_NAME})
 endif()

diff --git a/cuvec/cpython.py b/cuvec/cpython.py
@@ -88,8 +88,12 @@ def __new__(cls, arr):
             (do not do `cuvec.CuVec((42, 1337))`;
             instead use `cuvec.zeros((42, 137))`"""))
 
+    __array_interface__: Dict[str,
+                              Any] # <https://numpy.org/doc/stable/reference/arrays.interface.html>
+
     @property
     def __cuda_array_interface__(self) -> Dict[str, Any]:
+        """<https://numba.readthedocs.io/en/stable/cuda/cuda_array_interface.html>"""
         if not hasattr(self, 'cuvec'):
             raise AttributeError(
                 dedent("""\

diff --git a/cuvec/include/cuvec.cuh b/cuvec/include/cuvec.cuh
@@ -2,13 +2,8 @@
  * Pure CUDA/C++11 template header. Provides:
  * - CuVec<T> // analogous to `std::vector` but using CUDA unified memory
  *
- * SWIG helpers wrapping `CuVec<T>`. Provides:
- * - SwigCuVec<T> // contains `CuVec<T> vec` and `std::vector<size_t> shape`
- * - SwigCuVec<T> *SwigCuVec_new(std::vector<size_t> shape)
- * - void SwigCuVec_del(SwigCuVec<T> *self)
- * - T *SwigCuVec_data(SwigCuVec<T> *self)
- * - size_t SwigCuVec_address(SwigCuVec<T> *self)
- * - std::vector<size_t> SwigCuVec_shape(SwigCuVec<T> *self)
+ * Helpers wrapping `CuVec<T>`. Provides:
+ * - NDCuVec<T> // contains `CuVec<T> vec` and `std::vector<size_t> shape`
  */
 #ifndef _CUVEC_H_
 #define _CUVEC_H_
@@ -101,7 +96,7 @@ template <class T> using CuVec = std::vector<T, CuAlloc<T>>;
 #endif // CUVEC_DISABLE_CUDA
 #endif // _CUVEC_HALF
 
-/// pybind11 helpers
+/// external wrapper helper
 template <class T> struct NDCuVec {
   CuVec<T> vec;
   std::vector<size_t> shape;
@@ -117,31 +112,6 @@ template <class T> struct NDCuVec {
     if (size != vec.size()) throw std::length_error("reshape: size mismatch");
     this->shape = shape;
   }
-  ~NDCuVec() {
-    vec.clear();
-    vec.shrink_to_fit();
-    shape.clear();
-    shape.shrink_to_fit();
-  }
 };
 
-/// SWIG helpers
-template <class T> using SwigCuVec = NDCuVec<T>;
-template <class T> SwigCuVec<T> *SwigCuVec_new(std::vector<size_t> shape) {
-  SwigCuVec<T> *self = new SwigCuVec<T>(shape);
-  return self;
-}
-template <class T> void SwigCuVec_del(SwigCuVec<T> *self) {
-  self->~NDCuVec();
-  delete self;
-}
-template <class T> T *SwigCuVec_data(SwigCuVec<T> *self) { return self->vec.data(); }
-template <class T> size_t SwigCuVec_address(SwigCuVec<T> *self) {
-  return (size_t)SwigCuVec_data(self);
-}
-template <class T> std::vector<size_t> SwigCuVec_shape(SwigCuVec<T> *self) { return self->shape; }
-template <class T> void SwigCuVec_reshape(SwigCuVec<T> *self, const std::vector<size_t> &shape) {
-  self->reshape(shape);
-}
-
 #endif // _CUVEC_H_
diff --git a/cuvec/include/cuvec.i b/cuvec/include/cuvec.i
@@ -1,13 +1,13 @@
 /**
- * SWIG template header wrapping `SwigCuVec<T>` as defined in "cuvec.cuh"
+ * SWIG template header wrapping `NDCuVec<T>` as defined in "cuvec.cuh"
  * for external use via `%include "cuvec.i"`.
  */
 %include "std_vector.i"
 %{
-#include "cuvec.cuh"   // SwigCuVec<T>
+#include "cuvec.cuh"   // NDCuVec<T>
 %}
 /// expose definitions
-template <class T> struct SwigCuVec {
+template <class T> struct NDCuVec {
   CuVec<T> vec;
   std::vector<size_t> shape;
 };
diff --git a/cuvec/include/cuvec_pybind11.cuh b/cuvec/include/cuvec_pybind11.cuh
@@ -30,8 +30,7 @@ PYBIND11_MAKE_OPAQUE(NDCuVec<double>);
       .def(pybind11::init<>())                                                                    \
       .def(pybind11::init<std::vector<size_t>>())                                                 \
       .def_property(                                                                              \
-          "shape", [](const NDCuVec<T> *v) { return &(v->shape); }, &NDCuVec<T>::reshape)         \
-      .def_property_readonly("address",                                                           \
-                             [](const NDCuVec<T> *v) { return (size_t)v->vec.data(); })
+          "shape", [](const NDCuVec<T> &v) { return &v.shape; }, &NDCuVec<T>::reshape)            \
+      .def_property_readonly("address", [](const NDCuVec<T> &v) { return (size_t)v.vec.data(); })
 
 #endif // _CUVEC_PYBIND11_H_
diff --git a/cuvec/include/pycuvec.cuh b/cuvec/include/pycuvec.cuh
@@ -0,0 +1 @@
+#include "cuvec_cpython.cuh" // deprecated alias
diff --git a/cuvec/pybind11.py b/cuvec/pybind11.py
@@ -8,7 +8,7 @@
 from collections.abc import Sequence
 from functools import partial
 from textwrap import dedent
-from typing import Any, Dict, Optional
+from typing import Any, Dict, Optional, Tuple
 
 import numpy as np
 
@@ -35,7 +35,7 @@ def __init__(self, typechar: str, shape: Shape, cuvec=None):
           cuvec(NDCuVec<Type>): if given, `typechar` and `shape` are ignored
         """
         if cuvec is None:
-            shape = cu.Shape(shape if isinstance(shape, Sequence) else (shape,))
+            shape = shape if isinstance(shape, Sequence) else (shape,)
             cuvec = getattr(cu, f'NDCuVec_{typechar}')(shape)
         else:
             typechar = self.is_raw_cuvec(cuvec).group(1)
@@ -48,7 +48,7 @@ def shape(self) -> tuple:
 
     @shape.setter
     def shape(self, shape: Shape):
-        shape = cu.Shape(shape if isinstance(shape, Sequence) else (shape,))
+        shape = shape if isinstance(shape, Sequence) else (shape,)
         self.cuvec.shape = shape
 
     @property
@@ -87,8 +87,12 @@ def __new__(cls, arr):
             (do not do `cuvec.pybind11.CuVec((42, 1337))`;
             instead use `cuvec.pybind11.zeros((42, 137))`"""))
 
+    __array_interface__: Dict[str,
+                              Any] # <https://numpy.org/doc/stable/reference/arrays.interface.html>
+
     @property
     def __cuda_array_interface__(self) -> Dict[str, Any]:
+        """<https://numba.readthedocs.io/en/stable/cuda/cuda_array_interface.html>"""
         if not hasattr(self, 'cuvec'):
             raise AttributeError(
                 dedent("""\
@@ -101,6 +105,14 @@ def resize(self, new_shape: Shape):
         self._vec.shape = new_shape
         super().resize(new_shape, refcheck=False)
 
+    @property
+    def shape(self) -> Tuple[int, ...]:
+        return super().shape
+
+    @shape.setter
+    def shape(self, new_shape: Shape):
+        self.resize(new_shape)
+
 
 def zeros(shape: Shape, dtype="float32") -> CuVec:
     """

diff --git a/cuvec/src/cuvec_swig.i b/cuvec/src/cuvec_swig.i
@@ -0,0 +1,58 @@
+%module cuvec_swig
+
+%include "exception.i"
+%exception {
+  try {
+    $action
+  } catch (const std::exception &e) {
+    SWIG_exception(SWIG_RuntimeError, e.what());
+  }
+}
+
+%include "cuvec.i" // NDCuVec<T>
+
+%{
+template <class T> NDCuVec<T> *NDCuVec_new(std::vector<size_t> shape) {
+  NDCuVec<T> *self = new NDCuVec<T>(shape);
+  return self;
+}
+template <class T> void NDCuVec_del(NDCuVec<T> *self) {
+  delete self;
+}
+template <class T> size_t NDCuVec_address(NDCuVec<T> *self) {
+  return (size_t)self->vec.data();
+}
+template <class T> std::vector<size_t> NDCuVec_shape(NDCuVec<T> *self) { return self->shape; }
+template <class T> void NDCuVec_reshape(NDCuVec<T> *self, const std::vector<size_t> &shape) {
+  self->reshape(shape);
+}
+%}
+template <class T> NDCuVec<T> *NDCuVec_new(std::vector<size_t> shape);
+template <class T> void NDCuVec_del(NDCuVec<T> *self);
+template <class T> size_t NDCuVec_address(NDCuVec<T> *self);
+template <class T> std::vector<size_t> NDCuVec_shape(NDCuVec<T> *self);
+template <class T> void NDCuVec_reshape(NDCuVec<T> *self, const std::vector<size_t> &shape);
+
+%template(NDCuVec_Shape) std::vector<size_t>;
+%define MKCUVEC(T, typechar)
+%template(NDCuVec_ ## typechar) NDCuVec<T>;
+%template(NDCuVec_ ## typechar ## _new) NDCuVec_new<T>;
+%template(NDCuVec_ ## typechar ## _del) NDCuVec_del<T>;
+%template(NDCuVec_ ## typechar ## _address) NDCuVec_address<T>;
+%template(NDCuVec_ ## typechar ## _shape) NDCuVec_shape<T>;
+%template(NDCuVec_ ## typechar ## _reshape) NDCuVec_reshape<T>;
+%enddef
+MKCUVEC(signed char, b)
+MKCUVEC(unsigned char, B)
+MKCUVEC(char, c)
+MKCUVEC(short, h)
+MKCUVEC(unsigned short, H)
+MKCUVEC(int, i)
+MKCUVEC(unsigned int, I)
+MKCUVEC(long long, q)
+MKCUVEC(unsigned long long, Q)
+#ifdef _CUVEC_HALF
+MKCUVEC(_CUVEC_HALF, e)
+#endif
+MKCUVEC(float, f)
+MKCUVEC(double, d)
diff --git a/cuvec/src/example_pybind11/CMakeLists.txt b/cuvec/src/example_pybind11/CMakeLists.txt
@@ -4,15 +4,14 @@ file(GLOB SRC LIST_DIRECTORIES false "*.cu")
 if(CUDAToolkit_FOUND)
   include_directories(${CUDAToolkit_INCLUDE_DIRS})
 endif()
-python_add_library(${PROJECT_NAME} MODULE WITH_SOABI ${SRC})
+pybind11_add_module(${PROJECT_NAME} MODULE WITH_SOABI ${SRC})
 target_include_directories(${PROJECT_NAME} PUBLIC
   "$<BUILD_INTERFACE:${${CMAKE_PROJECT_NAME}_INCLUDE_DIRS}>"
   "$<INSTALL_INTERFACE:${CMAKE_PROJECT_NAME}/include>")
 if(CUDAToolkit_FOUND)
-  target_link_libraries(${PROJECT_NAME} PRIVATE pybind11::headers CUDA::cudart_static)
+  target_link_libraries(${PROJECT_NAME} PRIVATE CUDA::cudart_static)
 else()
   set_source_files_properties(${SRC} PROPERTIES LANGUAGE CXX)
-  target_link_libraries(${PROJECT_NAME} PRIVATE pybind11::headers)
 endif()
 
 set_target_properties(${PROJECT_NAME} PROPERTIES

diff --git a/cuvec/src/example_pybind11/example_pybind11.cu b/cuvec/src/example_pybind11/example_pybind11.cu
@@ -3,7 +3,7 @@
  *
  * Copyright (2021) Casper da Costa-Luis
  */
-#include "cuvec_pybind11.cuh"  // NDCuVec
+#include "cuvec.cuh"           // NDCuVec
 #include <pybind11/pybind11.h> // pybind11, PYBIND11_MODULE
 #include <stdexcept>           // std::length_error
 #ifdef CUVEC_DISABLE_CUDA

diff --git a/cuvec/src/example_swig/example_swig.cu b/cuvec/src/example_swig/example_swig.cu
@@ -3,7 +3,7 @@
  *
  * Copyright (2021) Casper da Costa-Luis
  */
-#include "cuvec.cuh" // SwigCuVec, SwigCuVec_new
+#include "cuvec.cuh" // NDCuVec
 #include <stdexcept> // std::length_error
 #ifdef CUVEC_DISABLE_CUDA
 #include <chrono> // std::chrono
@@ -17,7 +17,7 @@ __global__ void _d_incr(float *dst, float *src, int X, int Y) {
   dst[y * X + x] = src[y * X + x] + 1;
 }
 #endif // CUVEC_DISABLE_CUDA
-SwigCuVec<float> *increment2d_f(SwigCuVec<float> &src, SwigCuVec<float> *output, bool timing) {
+NDCuVec<float> *increment2d_f(NDCuVec<float> &src, NDCuVec<float> *output, bool timing) {
   auto &N = src.shape;
   if (N.size() != 2) throw std::length_error("`src` must be 2D");
 
@@ -32,7 +32,7 @@ SwigCuVec<float> *increment2d_f(SwigCuVec<float> &src, SwigCuVec<float> *output,
 #endif
 
   if (!output)
-    output = SwigCuVec_new<float>(N);
+    output = new NDCuVec<float>(N);
   else if (N != output->shape)
     throw std::length_error("`output` must be same shape as `src`");
 

diff --git a/cuvec/src/example_swig/example_swig.i b/cuvec/src/example_swig/example_swig.i
@@ -9,10 +9,10 @@
   }
 }
 
-%include "cuvec.i" // SwigCuVec<T>
+%include "cuvec.i" // NDCuVec<T>
 %{
 /// signatures from "example_swig.cu"
-SwigCuVec<float> *increment2d_f(SwigCuVec<float> &src, SwigCuVec<float> *output = NULL, bool timing = false);
+NDCuVec<float> *increment2d_f(NDCuVec<float> &src, NDCuVec<float> *output = NULL, bool timing = false);
 %}
 /// expose definitions
-SwigCuVec<float> *increment2d_f(SwigCuVec<float> &src, SwigCuVec<float> *output = NULL, bool timing = false);
+NDCuVec<float> *increment2d_f(NDCuVec<float> &src, NDCuVec<float> *output = NULL, bool timing = false);
diff --git a/cuvec/src/pybind11.cu b/cuvec/src/pybind11.cu
@@ -12,6 +12,7 @@
 PYBIND11_MODULE(cuvec_pybind11, m) {
   m.doc() = "PyBind11 external module.";
   pybind11::bind_vector<std::vector<size_t>>(m, "Shape");
+  pybind11::implicitly_convertible<pybind11::tuple, std::vector<size_t>>();
   PYBIND11_BIND_NDCUVEC(signed char, b);
   PYBIND11_BIND_NDCUVEC(unsigned char, B);
   PYBIND11_BIND_NDCUVEC(char, c);
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		#include "cuvec_cpython.cuh" // deprecated alias