fix some NSE documentation #2517
Workflow file for this run
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| name: burn_cell | |
| on: [pull_request] | |
| jobs: | |
| burn_cell: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get AMReX | |
| run: | | |
| mkdir external | |
| cd external | |
| git clone https://github.com/AMReX-Codes/amrex.git | |
| cd amrex | |
| git checkout development | |
| echo 'AMREX_HOME=$(GITHUB_WORKSPACE)/external/amrex' >> $GITHUB_ENV | |
| echo $AMREX_HOME | |
| if [[ -n "${AMREX_HOME}" ]]; then exit 1; fi | |
| cd ../.. | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update -y -qq | |
| sudo apt-get -qq -y install curl cmake jq clang g++>=9.3.0 | |
| - name: Compile, burn_cell (VODE, subch_simple) | |
| run: | | |
| cd unit_test/burn_cell | |
| make realclean | |
| make NETWORK_DIR=subch_simple -j 4 | |
| - name: Run burn_cell (VODE, subch_simple) | |
| run: | | |
| cd unit_test/burn_cell | |
| ./main3d.gnu.ex inputs_subch_simple amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out | |
| - name: Compare to stored output (VODE, subch_simple) | |
| run: | | |
| cd unit_test/burn_cell | |
| diff -I "^Initializing AMReX" -I "^AMReX" -I "^reading in reaclib rates" test.out ci-benchmarks/subch_simple_unit_test.out | |
| - name: Compile, burn_cell (VODE, ECSN) | |
| run: | | |
| cd unit_test/burn_cell | |
| make realclean | |
| make NETWORK_DIR=ECSN -j 4 | |
| - name: Run burn_cell (VODE, ECSN) | |
| run: | | |
| cd unit_test/burn_cell | |
| # disable fpe_trap_overflow, as there's a spurious exception when | |
| # calculating DEL in vode_dvnlsd.H. | |
| ./main3d.gnu.ex inputs_ecsn amrex.fpe_trap_{invalid,zero}=1 > test.out | |
| - name: Compare to stored output (VODE, ECSN) | |
| run: | | |
| cd unit_test/burn_cell | |
| diff -I "^Initializing AMReX" -I "^AMReX" -I "^reading in reaclib rates" test.out ci-benchmarks/ecsn_unit_test.out | |
| - name: Compile, burn_cell (VODE, ignition_chamulak) | |
| run: | | |
| cd unit_test/burn_cell | |
| make realclean | |
| make NETWORK_DIR=ignition_chamulak -j 4 | |
| - name: Run burn_cell (VODE, ignition_chamulak) | |
| run: | | |
| cd unit_test/burn_cell | |
| ./main3d.gnu.ex inputs_ignition_chamulak amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out | |
| - name: Compare to stored output (VODE, ignition_chamulak) | |
| run: | | |
| cd unit_test/burn_cell | |
| diff -I "^Initializing AMReX" -I "^AMReX" -I "^reading in reaclib rates" test.out ci-benchmarks/chamulak_VODE_unit_test.out | |
| - name: Compile, burn_cell (ForwardEuler, triple_alpha_plus_cago) | |
| run: | | |
| cd unit_test/burn_cell | |
| make realclean | |
| make NETWORK_DIR=triple_alpha_plus_cago INTEGRATOR_DIR=ForwardEuler -j 4 | |
| - name: Run burn_cell (ForwardEuler, triple_alpha_plus_cago) | |
| run: | | |
| cd unit_test/burn_cell | |
| ./main3d.gnu.ex inputs_triple amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out | |
| - name: Compare to stored output (ForwardEuler, triple_alpha_plus_cago) | |
| run: | | |
| cd unit_test/burn_cell | |
| diff -I "^Initializing AMReX" -I "^AMReX" -I "^reading in reaclib rates" test.out ci-benchmarks/triple_alpha_plus_cago_FE_unit_test.out | |
| - name: Compile, burn_cell (BackwardEuler, subch_simple) | |
| run: | | |
| cd unit_test/burn_cell | |
| make realclean | |
| make NETWORK_DIR=subch_simple INTEGRATOR_DIR=BackwardEuler -j 4 | |
| - name: Run burn_cell (BackwardEuler, subch_simple) | |
| run: | | |
| cd unit_test/burn_cell | |
| ./main3d.gnu.ex inputs_subch_simple amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out | |
| - name: Compare to stored output (BackwardEuler, subch_simple) | |
| run: | | |
| cd unit_test/burn_cell | |
| diff -I "^Initializing AMReX" -I "^AMReX" -I "^reading in reaclib rates" test.out ci-benchmarks/subch_simple_BE_unit_test.out | |
| - name: Compile, burn_cell (QSS, aprox13) | |
| run: | | |
| cd unit_test/burn_cell | |
| make realclean | |
| make NETWORK_DIR=aprox13 INTEGRATOR_DIR=QSS -j 4 | |
| - name: Run burn_cell (QSS, aprox13) | |
| run: | | |
| cd unit_test/burn_cell | |
| ./main3d.gnu.ex inputs_aprox13 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out | |
| - name: Compare to stored output (QSS, aprox13) | |
| run: | | |
| cd unit_test/burn_cell | |
| diff -I "^Initializing AMReX" -I "^AMReX" -I "^reading in reaclib rates" test.out ci-benchmarks/aprox13_QSS_unit_test.out | |
| - name: Compile, burn_cell (RKC, aprox13) | |
| run: | | |
| cd unit_test/burn_cell | |
| make realclean | |
| make NETWORK_DIR=aprox13 INTEGRATOR_DIR=RKC -j 4 | |
| - name: Run burn_cell (RKC, aprox13) | |
| run: | | |
| cd unit_test/burn_cell | |
| ./main3d.gnu.ex inputs_aprox13 unit_test.temperature=1.e9 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out | |
| - name: Compare to stored output (RKC, aprox13) | |
| run: | | |
| cd unit_test/burn_cell | |
| diff -I "^Initializing AMReX" -I "^AMReX" -I "^reading in reaclib rates" test.out ci-benchmarks/aprox13_RKC_unit_test.out | |
| - name: Print backtrace | |
| if: ${{ failure() && hashFiles('unit_test/burn_cell/Backtrace.0') != '' }} | |
| run: cat unit_test/burn_cell/Backtrace.0 |