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fix some NSE documentation #2297

fix some NSE documentation

fix some NSE documentation #2297

Workflow file for this run

name: burn_cell_sdc
on: [pull_request]
jobs:
burn_cell_sdc:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Get AMReX
run: |
mkdir external
cd external
git clone https://github.com/AMReX-Codes/amrex.git
cd amrex
git checkout development
echo 'AMREX_HOME=$(GITHUB_WORKSPACE)/external/amrex' >> $GITHUB_ENV
echo $AMREX_HOME
if [[ -n "${AMREX_HOME}" ]]; then exit 1; fi
cd ../..
- name: Install dependencies
run: |
sudo apt-get update -y -qq
sudo apt-get -qq -y install curl cmake jq clang g++>=9.3.0
- name: Compile, burn_cell_sdc (aprox19)
run: |
cd unit_test/burn_cell_sdc
make realclean
make NETWORK_DIR=aprox19 -j 4
- name: Run burn_cell_sdc (aprox19)
run: |
cd unit_test/burn_cell_sdc
./main3d.gnu.ex inputs_aprox19.ci amrex.fpe_trap_{invalid,zero,overflow}=1
- name: Compare to stored output (aprox19)
run: |
cd unit_test/burn_cell_sdc
diff state_over_time.txt ci-benchmarks/aprox19_state_over_time.txt
- name: Compile, burn_cell_sdc (BackwardEuler, aprox19)
run: |
cd unit_test/burn_cell_sdc
make realclean
make INTEGRATOR_DIR=BackwardEuler NETWORK_DIR=aprox19 -j 4
- name: Run burn_cell_sdc (BackwardEuler, aprox19)
run: |
cd unit_test/burn_cell_sdc
./main3d.gnu.ex inputs_aprox19.ci amrex.fpe_trap_{invalid,zero,overflow}=1
- name: Compare to stored output (BackwardEuler, aprox19)
run: |
cd unit_test/burn_cell_sdc
diff state_over_time.txt ci-benchmarks/aprox19_BE_state_over_time.txt
- name: Compile, burn_cell_sdc (RKC, aprox19)
run: |
cd unit_test/burn_cell_sdc
make realclean
make INTEGRATOR_DIR=RKC NETWORK_DIR=aprox19 -j 4
- name: Run burn_cell_sdc (RKC, aprox19)
run: |
cd unit_test/burn_cell_sdc
./main3d.gnu.ex inputs_aprox19.ci amrex.fpe_trap_{invalid,zero,overflow}=1
- name: Compare to stored output (RKC, aprox19)
run: |
cd unit_test/burn_cell_sdc
diff state_over_time.txt ci-benchmarks/aprox19_RKC_state_over_time.txt
- name: Print backtrace
if: ${{ failure() && hashFiles('unit_test/burn_cell_sdc/Backtrace.0') != '' }}
run: cat unit_test/burn_cell_sdc/Backtrace.0