Update parameters to current development

Exec/science/flame_wave/ci-benchmarks/job_info_params.txt

@@ -127,6 +127,8 @@
 [*] castro.react_rho_min = 100
 [*] castro.react_rho_max = 5e+07
     castro.disable_shock_burning = 0
+    castro.shock_detection_threshold = 0.666667
+    castro.shock_detection_include_sources = 1
     castro.T_guess = 1e+08
     castro.drive_initial_convection = 0
     castro.drive_initial_convection_tmax = 1e+200
@@ -188,7 +190,7 @@
 [*] problem.T_lo = 8e+06
 [*] problem.dens_base = 3.43e+06
 [*] problem.H_star = 2000
-[*] problem.atm_delta = 50
+[*] problem.atm_delta = 100
     problem.fuel1_name = helium-4
     problem.fuel2_name = 
     problem.fuel3_name = 
@@ -229,13 +231,20 @@
     integrator.nonaka_k = 0
     integrator.nonaka_level = 0
     integrator.nonaka_file = nonaka_plot.dat
+    integrator.use_burn_retry = 0
+    integrator.retry_swap_jacobian = 1
+    integrator.retry_rtol_spec = 1e-12
+    integrator.retry_rtol_enuc = 1e-06
+    integrator.retry_atol_spec = 1e-08
+    integrator.retry_atol_enuc = 1e-06
     integrator.do_species_clip = 1
     integrator.use_number_densities = 0
     integrator.sdc_burn_tol_factor = 1
     integrator.scale_system = 0
     integrator.nse_iters = 3
     integrator.nse_deriv_dt_factor = 0.05
     integrator.nse_include_enu_weak = 1
+    integrator.linalg_do_pivoting = 1
     screening.enable_chabrier1998_quantum_corr = 0
     integrator.subtract_internal_energy = 0
     eos.use_eos_coulomb = 1