remove python 2

fix Becksteinlab#177

doc/sphinx/source/conf.py

@@ -122,8 +122,7 @@
 html_theme = 'sphinx_rtd_theme'
 
 html_theme_options = {
-    'canonical_url': '',
-    #'logo_only': True,
+    'logo_only': False,
     'display_version': True,
     'prev_next_buttons_location': 'bottom',
     'style_external_links': False,
@@ -152,12 +151,12 @@
 
 # The name of an image file (relative to this directory) to place at the top
 # of the sidebar.
-#html_logo = None
+html_logo = "_static/mdpow-logo.png"
 
 # The name of an image file (within the static path) to use as favicon of the
 # docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
 # pixels large.
-#html_favicon = None
+html_favicon = "_static/mdpow.ico"
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
@@ -244,7 +243,7 @@
 intersphinx_mapping = {'https://docs.python.org/': None,
                        'https://numpy.org/doc/stable/': None,
                        'https://docs.scipy.org/doc/scipy/reference/': None,
-                       'https://gromacswrapper.readthedocs.org/en/latest/': None,
+                       'https://gromacswrapper.readthedocs.io/en/latest': None,
                    }
 
 

doc/sphinx/source/index.txt

@@ -50,7 +50,7 @@ It should be possible to use any of these Gromacs versions without
 further adjustments, thanks to the underlying GromacsWrapper library
 [#GromacsWrapperFramework]_.
 
-Nevertheless, you should _always_ check the topology and runinput
+Nevertheless, you should *always* check the topology and runinput
 (mdp) files for the version of Gromacs_ that you are using.
 
 
@@ -141,7 +141,6 @@ For current issues and open feature requests please look through the
    fep
    utilities
    forcefields
-   tables
 
 
 .. rubric:: Indices and tables