added latest annovar annotation files / updated current annotation dbs

AG-Boerries · Sep 29, 2020 · 3dec4fb · 3dec4fb
1 parent ed7db9c
commit 3dec4fb
Showing 1 changed file with 2 additions and 5 deletions.
diff --git a/setup.sh b/setup.sh
@@ -175,12 +175,9 @@ function setup_tool_annovar() {
   ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar dbnsfp35a humandb/
   # only take gnomAD_genome
   ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar gnomad211_genome humandb/ # version 2.1.1
-  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar gnomad_exome humandb/
-  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar exac03 humandb/
-  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar esp6500siv2_ea humandb/
-  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar 1000g2015aug humandb/
   ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar avsnp150 humandb/
-  ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar clinvar_20180603 humandb/
+  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar clinvar_20180603 humandb/
+  ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar clinvar_20200316 humandb/
   ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar intervar_20180118 humandb/
 
   echo "done"