Fix bug that overwrote REF_* keys when those were the explicitly specified keys for the training reference quantities #403
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Current code stores calculator quantities in
REF_*
keys, but then following code overwrites those keys even if they were the explicitly passed-in keys, not the values extracted from the calculator.This PR fixes this bug, and also stores in
_REF_*
, following the (vague) convention that a key starting with_
is for internal use.