Merge branch 'e2e-testing' into e2e-testing

.gitignore

@@ -111,4 +111,4 @@ sw.*
 .certs/
 
 test/cypress/videos
-test/cypress/downloads
+test/cypress/downloads

cypress/e2e/datasets.cy.js

@@ -0,0 +1,186 @@
+const datasetIds = [127];
+
+
+datasetIds.forEach(datasetId => {
+
+  describe(`Dataset ${datasetId}`, {testIsolation: false }, function () {
+    before(function () {
+      cy.visit(`/datasets/${datasetId}?type=dataset`)
+    });
+
+    it("Landing page", function () {
+      cy.get('.dataset-image').should('have.attr', 'src').and('include', 'https://assets.discover.pennsieve.io/')
+      // Hover over author 
+      cy.get(':nth-child(2) > .contributor-item').should('be.visible').trigger('mouseenter', { eventConstructor: 'MouseEvent' })
+
+      //only one visible popover
+      cy.get('.orcid-popover:visible').should('have.length', 1)
+
+      //Check Get Dataset directs to files tab
+      cy.contains('.button-container span', 'Get Dataset').click()
+      cy.get('.nuxt-link-exact-active').should('have.text', ' Files ');
+      cy.get('[style=""] > .heading2.mb-8').should('have.text', 'Download Dataset').and('be.visible')
+      //Checkt Cite Dataset direccts to Cite tab
+      cy.contains('.button-container span', 'Cite Dataset').click()
+      cy.get('.nuxt-link-exact-active').should('have.text', ' Cite ');
+      cy.get('.citation-details > .heading2').should('have.text', '\n    Dataset Citation\n  ').and('be.visible')
+      cy.get('.dataset-information-box > :nth-child(2) > a').should('have.attr', 'href').and('include', 'doi.org').then((href) => {
+        cy.request(href).then((resp) => {
+          expect(resp.status).to.eq(200);
+          expect(resp.body).to.include(`datasets/${datasetId}/version`);
+        })
+      });
+      cy.get(':nth-child(2) > .contributor-list > li > .el-tooltip > .tooltip-item > a').each($el => {
+        cy.wrap($el).should('have.attr', 'href').and('include', '/data?type=');
+      });
+      cy.get('.dataset-information-box > div').contains('View other versions').click();
+      //Check if each link 
+      cy.get('.el-col-push-1 > a').each(($link) => {
+        cy.wrap($link).should('have.attr', 'href').and('include', 'doi.org').then((href) => {
+          cy.request(href).then((resp) => {
+            cy.request(href).its('body').should('include', `/datasets/${datasetId}/version`); 
+          });
+        });
+      })
+    });
+    it("Abstract Tab", function () {
+      cy.contains('#datasetDetailsTabsContainer .style1', ' Abstract ').click();
+      cy.get('.nuxt-link-exact-active').should('have.text', ' Abstract ');
+      cy.get('.dataset-description-info > :nth-child(1) > :nth-child(1) > strong').contains('Study Purpose');
+      cy.get('.dataset-description-info > :nth-child(1) > :nth-child(2) > strong').contains('Data Collection');
+      cy.get('.dataset-description-info > :nth-child(1) > :nth-child(3) > strong').contains('Primary Conclusion');
+      cy.get('.experimental-design-section-text-column').contains('Protocol Links');
+      //cy.get('.experimental-design-container .link2').should('have.attr', 'href').and('include', 'https://doi.org/')
+      //The following regular expression should capture space and letters
+      cy.get('.dataset-description-info').contains(/Experimental Approach: *(.+)/);
+      cy.get('.dataset-description-info').contains('Subject Information:');
+      cy.get('.dataset-description-info').contains(/Anatomical structure: *(.+)/);
+      cy.get('.dataset-description-info').contains(/Species: *(.+)/);
+      cy.get('.dataset-description-info').contains(/Sex: *(.+)/);
+      cy.get('.dataset-description-info').contains(/Number of samples: *(.+)/);
+      cy.get('.dataset-description-info').contains(/Keywords: *(.+)/);
+      cy.contains('.dataset-description-info a', 'Download Metadata file').should('have.attr', 'href').and('include', 'metadata').then((href) => {
+        cy.request(href).then((resp) => {
+          expect(resp.status).to.eq(200)
+        })
+      })
+    });
+    it("About Tab", function () {
+      cy.contains('#datasetDetailsTabsContainer .style1', ' About ').click();
+      cy.get('.nuxt-link-exact-active').should('have.text', ' About ');
+      cy.get('.dataset-about-info').contains(/Title: *(.+)/);
+      cy.get('.dataset-about-info').contains(/First Published: *(.+)/);
+      cy.get('.dataset-about-info').contains(/Last Published: *(.+)/);
+      cy.get('.dataset-about-info').contains(/Contact Author: *(.+)/);
+      cy.get('.dataset-about-info').contains(/Award[(]s[)]: (.+)/);
+      cy.get('.dataset-about-info').contains(/Funding Program[(]s[)]: *(.+)/);
+      cy.get('.dataset-about-info').contains(/Associated project[(]s[)]: *(.+)/);
+      cy.get('.dataset-about-info').contains(/Institution[(]s[)]:  *(.+)/);
+      cy.get('.dataset-about-info').contains(/Associated project[(]s[)]: *(.+)/);
+      cy.get('.dataset-about-info').contains(/Version (.+) Revision (.+): *(.+)/);
+      cy.get('.dataset-about-info').contains(/Dataset DOI: *(.+)/);
+      cy.get('.about-section-container > :nth-child(2) > :nth-child(2) > a').should('have.attr', 'href').and('include', 'mailto');
+      //Match award link to associated project
+      cy.get(':nth-child(11) > :nth-child(2) > a').invoke('attr', 'href').then(value => {
+        cy.get(':nth-child(8) > :nth-child(2) > a').should('have.attr', 'href', value);
+      });
+      //match author to contributors
+      cy.get('.about-section-container > :nth-child(2) > :nth-child(1)').invoke('text').then(value => {
+        cy.get('.similar-datasets-container').contains(value);
+      })
+    });
+    it("Cite Tab", function () {
+      cy.contains('#datasetDetailsTabsContainer .style1', ' Cite ').click();
+      cy.get('.nuxt-link-exact-active').should('have.text', ' Cite ');
+      cy.get('.dataset-information-box > :nth-child(2) > a > u').invoke('text').then(value => {
+        const expectedLink = 'https://citation.crosscite.org/?doi=' + value;
+        cy.get('.citation-details > p > a').should('have.attr', 'href', expectedLink);
+      })
+    });
+    it("Files Tab", function () {
+      //First check if there is a Files tab
+      cy.get('#datasetDetailsTabsContainer .style1').then(($tab) => {
+        if ($tab.text().includes(' Files ')) {
+          cy.contains('#datasetDetailsTabsContainer .style1', ' Files ').click();
+          cy.get('.nuxt-link-exact-active').should('have.text', ' Files ');
+          cy.get('[style=""] > .heading2.mb-8').should('have.text', 'Download Dataset');
+          cy.get('.left-column > :nth-child(1) > div > .label4').should('have.text', 'Option 1 - Direct download: ');
+          cy.get('.aws-download-column > :nth-child(1) > .label4').should('have.text', 'Option 2 - AWS download: ');
+          //cy.get('.left-column > :nth-child(1) > a > .el-button > span').should('be.visible');
+          cy.get('.left-column .el-button').contains('Download full dataset').should('be.visible');
+          //cy.get('.left-column > :nth-child(1) > a > .el-button').should('be.enabled');
+          //Find the download file button
+          cy.contains('.content .body1 .el-table__fixed-body-wrapper .el-table__row', ' dataset_description.xlsx ').should('have.length', 1).as('datasetDescription');
+          cy.get('@datasetDescription').find('.el-table_1_column_5').should('have.length', 1).as('icons');
+          cy.get('@icons').find('form[id=zipForm]').should('have.length', 1);
+          //there should be 4 icons, one for each action
+          cy.get('@icons').find('svg').should('have.length', 4);
+          //Check get share links
+          cy.get('@icons').find(':nth-child(4)').click({force: true});
+          cy.get('.el-message').should('be.visible');
+          //Check oSPARC link
+          cy.get('@icons').find(':nth-child(3) > .el-tooltip > .svg-icon').click({force: true});
+          cy.get('.files-table-table .el-dialog  .svg-icon').click();
+        } else {
+          this.skip();
+        }
+      });
+    });
+    it("Gallery Tab", function () {
+      cy.contains('#datasetDetailsTabsContainer .style1', ' Gallery ').click();
+      cy.get('.content > .full-size').then(($content) => {
+        //The following call may fail if the wait() is not implemented here
+        cy.wait(500);
+        const gallery = $content.find('.gallery-container');
+        if (gallery && gallery.length) {
+          cy.wrap(gallery).find('.sparc-design-system-pagination').as('pagination');
+          cy.get('@pagination').find('li.number').should('have.length.least', 1);
+          cy.wrap(gallery).find('.el-card').should('have.length.least', 1).each($card => {
+            cy.wrap($card).contains('span', ' View ');
+            //Need to test newly opened viewers
+          });
+        } else {
+          cy.wrap($content).contains(' This dataset does not contain gallery items ');
+        }
+      });
+    });
+    it("References Tab", function () {
+      //First check if reference tab is present
+      cy.get('#datasetDetailsTabsContainer .style1').then(($tab) => {
+        if ($tab.text().includes(' References ')) {
+          cy.contains('#datasetDetailsTabsContainer .style1', ' References ').click();
+          cy.get('.nuxt-link-exact-active').should('have.text', ' References ');
+          cy.get('.dataset-references .heading2').contains('Associated Publications for this Dataset');
+          cy.get('.dataset-references .citation-container').each(el => {
+            cy.wrap(el).find('div > a').should('have.attr', 'href').and('include', 'doi.org');
+            cy.wrap(el).find('.copy-button').click();
+            cy.get('.el-message').should('be.visible');
+          });
+        } else {
+          this.skip();
+        }
+      });
+    });
+    it("Versions Tab", function () {
+      //First check if version tab is present
+      cy.get('#datasetDetailsTabsContainer .style1').then(($tab) => {
+        if ($tab.text().includes(' Versions ')) {
+          cy.contains('#datasetDetailsTabsContainer .style1', ' Versions ').click();
+          cy.get('.nuxt-link-exact-active').should('have.text', ' Versions ');
+          cy.get('.table-rows .el-col-push-1 > a').each($el => {
+            cy.wrap($el).should('have.attr', 'href').and('include', 'doi.org').then((href) => {
+              cy.request(href).its('body').should('include', `/datasets/${datasetId}/version`); 
+            })
+          });
+        }
+      });
+    });
+    it("Landing page project page", function () {
+      cy.get('.mt-8 > a > u').click()
+      cy.get('.subpage').click()
+      cy.get('.heading2').should('be.visible')
+      cy.url().should('include', '/projects/')
+    });
+  });
+
+});

cypress/e2e/finddata.cy.js

@@ -0,0 +1,186 @@
+// const categories = ['dataset']
+const categories = ['dataset', 'model', 'simulation', 'projects']
+
+const keywords = ['Spine', 'neck']
+
+const singleFacet = 'Male'
+
+const multipleFacets = ['Human', 'Organ']
+
+categories.forEach((category) => {
+
+  describe(`Find Data in ${category}`, { testIsolation: false }, function () {
+    before(function () {
+      cy.visit(`/data?type=${category}`)
+    })
+
+    it('All Page Features', function () {
+      // Sort dropdown function testing
+      // Test whether the sort function can be triggered and text can be shown
+      cy.get('.label1 > .el-dropdown > .filter-dropdown').then(($dropdown) => {
+        cy.wrap($dropdown).click()
+        cy.contains('Z-A').click()
+        cy.wrap($dropdown).should('contain', 'Z-A')
+      })
+      // Tooltips showup testing
+      // Test whether content will be displayed
+      cy.get('[role="tooltip"]').should('not.be.visible')
+      cy.get('.purple-fill').click()
+      cy.get('[role="tooltip"]').should('be.visible')
+      cy.get('[role="tooltip"] > .el-popover__title').should('contain', 'How do filters work?')
+      cy.get('.label-header > :nth-child(1) > .label-title').then(($label) => {
+        const tooltipExist = $label.text().includes('Availability')
+        if (tooltipExist) {
+          cy.get('.el-tooltip').click()
+          cy.get('[role="tooltip"]:visible').should('contain', 'SPARC')
+        }
+      })
+      // Dataset show testing
+      // Test whether the number of displayed datasets can be changed
+      cy.get(':nth-child(1) > p > .el-dropdown > .filter-dropdown').click()
+      cy.get('.el-dropdown-menu > .el-dropdown-menu__item:visible').contains('20').click()
+      cy.get('.el-table__row').should('have.length', 20)
+    })
+    keywords.forEach((keyword) => {
+      it(`Keyword Search - ${keyword}`, function () {
+        cy.get('.el-input__inner').should('have.attr', 'placeholder', 'Enter search criteria')
+        cy.get('.el-input__inner').clear().type(keyword)
+        cy.get('.btn-clear-search > .svg-icon').should('be.visible')
+        cy.get('.search-text').click()
+        cy.url({ decode: true }).should('contain', keyword)
+        cy.wait(500)
+        cy.get(':nth-child(1) > p').then(($p) => {
+          const noResult = $p.text().includes('\n                  0 Results | Showing')
+          if (noResult) {
+            cy.get('.el-table__empty-text').should('exist')
+          } else {
+            cy.get('.el-table__empty-text').should('not.exist')
+            cy.get('.table-wrap').then(($table) => {
+              const keywordExist = $table.text().toLowerCase().includes(keyword.toLowerCase())
+              if (keywordExist) {
+                cy.get('b').contains(new RegExp(keyword, 'i')).should('exist')
+              } else {
+                cy.get('b').should('not.exist')
+              }
+            })
+          }
+        })
+        cy.get('.btn-clear-search > .svg-icon').click()
+        // *** There are situations that dataset cards do not show the (highlighted) keywords
+        // *** Just in case this happens for all the displayed dataset cards, extra tests may need to be added
+        // cy.get('')
+      })
+    })
+    it(`Single Faceted Browse Search - ${singleFacet}`, function () {
+      // let facetCategory
+      cy.get('.no-facets').should('contain', 'No filters applied')
+      // Expand all
+      cy.get('.expand-all-container > .el-link > .el-link--inner').click()
+      cy.get('.label-content-container').should('be.visible')
+      cy.get('.label-content-container').should('have.length.above', 0)
+      if (category !== 'projects') {
+        // *** This action is used to expand all parent facets in ANATOMICAL STRUCTURE
+        // *** Avoid error when using child facets as test facets
+        // *** Need to think of a solution to open the specific parent facet, instead of open all
+        cy.get('.el-tree-node__expand-icon.el-icon-caret-right:visible').not('.is-leaf').click({ multiple: true })
+      }
+      cy.get('.label-content-container').then(($label) => {
+        const singleFacetExist = $label.find('span.capitalize:visible').text().toLowerCase().includes(singleFacet.toLowerCase())
+        if (singleFacetExist) {
+          // cy.wrap($label).contains(singleFacet).parents('.sparc-design-system-component-dropdown-multiselect').within(() => {
+          //   cy.get('.label-title').then(($el) => {
+          //     facetCategory = $el.text()
+          //   })
+          // })
+          const regex = new RegExp(`(^| )${singleFacet}`, 'i')
+          cy.wrap($label).contains(regex).click()
+          cy.url({ decode: true }).should('contain', 'selectedFacetIds')
+          cy.get('.el-card__body > .capitalize').contains(regex).should('have.length', 1)
+          cy.get(':nth-child(1) > p').then(($p) => {
+            const noResult = $p.text().includes('\n                  0 Results | Showing')
+            if (noResult) {
+              cy.get('.el-table__empty-text').should('exist')
+            } else {
+              cy.get('.el-table__empty-text').should('not.exist')
+              cy.get('.table-wrap').then(($table) => {
+                const facetFoundInCard = $table.text().includes(singleFacet)
+                if (facetFoundInCard) {
+                  cy.wrap($table).should('contain', singleFacet)
+                } else {
+                  cy.wrap($table).should('not.contain', singleFacet)
+                  // cy.get(':nth-child(1) > .el-table_1_column_2 > .cell > :nth-child(1) > a').click()
+                  // cy.wait(5000)
+                  // cy.get('.dataset-description-info').contains(singleFacet)
+                }
+              })
+            }
+          })
+          // Uncheck
+          cy.get('.el-card__body > .capitalize').contains(regex).should('have.length', 1)
+          cy.wrap($label).contains(regex).click()
+          cy.get('.no-facets').should('contain', 'No filters applied')
+          // Close tag
+          cy.wrap($label).contains(regex).click()
+          cy.get('.el-card__body > .capitalize').contains(regex).should('have.length', 1)
+          cy.get('.el-tag__close').eq(0).click()
+          cy.get('.no-facets').should('contain', 'No filters applied')
+          // Reset all
+          cy.wrap($label).contains(regex).click()
+          cy.get('.tags-container > .flex > .el-link > .el-link--inner').click()
+          // *** 'No filters applied' sometimes will not appear after click 'reset all' in Cypress. BUG or Cypress issue?
+          // cy.get('.no-facets').should('contain', 'No filters applied')
+          // *** There is a bug with reset all function.
+          // cy.get('.el-card__body > .capitalize').should('not.exist')
+        } else {
+          this.skip()
+        }
+      })
+    })
+    it(`Multiple Faceted Browse Search - ${multipleFacets}`, function () {
+      cy.get('.expand-all-container > .el-link > .el-link--inner').click()
+      if (category !== 'projects') {
+        cy.get('.el-tree-node__expand-icon.el-icon-caret-right:visible').not('.is-leaf').click({ multiple: true })
+      }
+      cy.get('.label-content-container').then(($label) => {
+        let multipleFacetsExist = true
+        multipleFacets.forEach((facet) => {
+          multipleFacetsExist = multipleFacetsExist && $label.find('span.capitalize:visible').text().toLowerCase().includes(facet.toLowerCase())
+        })
+        if (multipleFacetsExist) {
+          multipleFacets.forEach((facet) => {
+            cy.wrap($label).contains(new RegExp(`^${facet}`, 'i')).click()
+          })
+          const multipleRegex = new RegExp(multipleFacets.join('|'), 'i')
+          cy.get('.el-card__body > .capitalize:visible').should('have.length.above', 1)
+          cy.get('.el-card__body > .capitalize:visible').contains(multipleRegex).should('exist')
+          cy.get(':nth-child(1) > p').then(($p) => {
+            const noResult = $p.text().includes('\n                  0 Results | Showing')
+            if (noResult) {
+              cy.get('.el-table__empty-text').should('exist')
+            } else {
+              cy.get('.el-table__empty-text').should('not.exist')
+              cy.get('.table-wrap').then(($content) => {
+                let facetsExistInCard = true
+                multipleFacets.forEach((facet) => {
+                  facetsExistInCard = facetsExistInCard || $content.text().toLowerCase().includes(facet.toLowerCase())
+                })
+                if (facetsExistInCard) {
+                  cy.wrap($content).contains(multipleRegex).should('exist')
+                } else {
+                  cy.wrap($content).contains(multipleRegex).should('not.exist')
+                }
+              })
+            }
+          })
+          multipleFacets.forEach((facet) => {
+            cy.get('.el-card__body > .capitalize').contains(new RegExp(` ${facet} `, 'i')).within(() => {
+              cy.get('.el-tag__close').click()
+            })
+          })
+        } else {
+          this.skip()
+        }
+      })
+    })
+  })
+})

cypress/e2e/homepage.cy.js

@@ -0,0 +1,11 @@
+describe('Homepage', () => {
+  beforeEach(function () {
+    cy.visit('')
+  });
+  it('Banner', () => {
+    cy.get('h1').should('contain', 'SPARC')
+  })
+  it('Navigation Bar', () => {
+    cy.get('.mobile-navigation > :nth-child(1) > :nth-child(1) > a').should('contain', 'Data')
+  })
+})