Changed input (put back log) and add tutorial

21cmfast · Sep 19, 2023 · e1bd699 · e1bd699
1 parent 761a1bd
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diff --git a/README.rst b/README.rst
@@ -55,7 +55,7 @@ To learn more, see the `Contributor Guide <https://github.com/21cmFAST/21cmEMU/b
 Citation
 ========
 
-If you use ``21cmEMU`` in your research please cite: (in prep.)
+If you use ``21cmEMU`` in your research please cite `this paper <https://arxiv.org/abs/2309.05697>`_.
 
 License
 =======

diff --git a/docs/tutorials/Tutorial_2.ipynb b/docs/tutorials/Tutorial_2.ipynb
diff --git a/docs/tutorials/Tutorial_3.ipynb b/docs/tutorials/Tutorial_3.ipynb
diff --git a/docs/tutorials/lightcone_example.npz b/docs/tutorials/lightcone_example.npz
diff --git a/poetry.lock b/poetry.lock
diff --git a/src/py21cmemu/inputs.py b/src/py21cmemu/inputs.py
@@ -128,7 +128,6 @@ def normalize(self, theta: np.ndarray) -> np.ndarray:
         """
         theta_woutdims = theta.copy()
         theta_woutdims[:, 7] /= 1000
-        theta_woutdims[:, [0, 2, 4, 6]] = np.log10(theta_woutdims[:, [0, 2, 4, 6]])
         theta_woutdims -= properties.limits[:, 0]
         theta_woutdims /= properties.limits[:, 1] - properties.limits[:, 0]
         return theta_woutdims

diff --git a/src/py21cmemu/outputs.py b/src/py21cmemu/outputs.py
@@ -202,7 +202,7 @@ def get_renormalized(self) -> EmulatorOutput:
         -------
         EmulatorOutput
             The emulator output with normalized quantities re-normalized back to
-            physical units.
+            physical units. Nothing is in log except UV LFs.
         """
         # Restore dimensions
         # Renormalize stuff that needs renormalization
@@ -230,6 +230,5 @@ def get_renormalized(self) -> EmulatorOutput:
         out["PS"] = 10 ** out["PS"]
         out["Ts"] = 10 ** out["Ts"]
         out["tau"] = 10 ** out["tau"]
-        out["UVLFs"] = 10 ** out["UVLFs"]
 
         return EmulatorOutput(**out).squeeze()