Test

Bump bio from 1.5.0 to 1.6.0 #242

	name: Test

	on:
	pull_request:
	push:
	branches:
	- master

	permissions:
	contents: read
	# Write permissions are required in order to produce annotations.
	checks: write

	jobs:
	rust:
	runs-on: ubuntu-latest
	steps:
	- uses: dtolnay/rust-toolchain@master
	with:
	toolchain: 1.75.0
	components: rustfmt, clippy
	- name: Checkout git repository
	uses: actions/checkout@master
	- name: Check Rust formatting
	run: cargo fmt -- --check
	- name: Install cargo-deny
	run: \|
	wget https://github.com/EmbarkStudios/cargo-deny/releases/download/0.14.3/cargo-deny-0.14.3-x86_64-unknown-linux-musl.tar.gz
	tar -xvf cargo-deny-0.14.3-x86_64-unknown-linux-musl.tar.gz
	mkdir -p ~/bin/
	cp cargo-deny-0.14.3-x86_64-unknown-linux-musl/cargo-deny ~/bin/
	rm -r cargo-deny-*
	echo "$HOME/bin" >> $GITHUB_PATH
	- name: Cache dependencies
	uses: Swatinem/rust-cache@v2
	- name: Deny duplicate dependencies and check licenses
	run: cargo deny --locked check
	- uses: 10XGenomics/clippy-check@main
	with:
	# TODO: re-enable some the -A lints below once we're clean on other
	# more important ones.
	args: \|
	--all-features --all-targets --locked --release --
	-D clippy::perf
	-D clippy::style
	-D clippy::wildcard_imports
	-W future_incompatible
	-W nonstandard_style
	-W rust_2018_compatibility
	-W rust_2021_compatibility
	-F clippy::unused_io_amount
	-D clippy::redundant_closure_for_method_calls
	-A clippy::comparison_chain
	- name: Build tests
	run: cargo test --no-run --frozen --release
	- name: Run Rust tests
	run: cargo test --frozen --release -- --nocapture

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