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32 changes: 28 additions & 4 deletions README.md
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# LazyBastardOnMate
# MuCHSALSA

LazyBastard which is running faster after consuming a lot of mate iced tea.
**Mu**lti-**C**ore **H**ybrid **S**hort- **A**nd **L**ong-read **S**equence **A**ssembler

Based on:
Gatter, Thomas, et al. "Economic genome assembly from low coverage Illumina and Nanopore data." 20th International
Workshop on Algorithms in Bioinformatics (WABI 2020). Schloss Dagstuhl-Leibniz-Zentrum für Informatik, 2020.

# Binary

A statically linked binary for x86-64 can be downloaded from the releases page on GitHub.

# Usage

In contrast to [LazyB](https://github.com/TGatter/LazyB) this tool has an additional parameter to control the level of
parallelization. Simply plug it into the LazyB-pipeline and set the additional parameter.
**ATTENTION**: If no value is given all available cores will be used.

# Building

Building the project requires cmake and can be done by running the following commands:
Building the project requires **cmake**, **clang-12** and **libc++-12** and can be done by running the following
commands:

```bash
mkdir build
cd build
cmake -DCMAKE_BUILD_TYPE=Release ..
make
```

If you want to link _libc++_ statically:

```bash
mkdir build
cd build
cmake ..
cmake -DCMAKE_BUILD_TYPE=Release -DENABLE_BUILD_FAT_EXE=1 ..
make
```

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6 changes: 2 additions & 4 deletions include/ms/graph/Graph.h
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Expand Up @@ -661,16 +661,14 @@ class DiGraph final : public GraphBase {
/**
* Returns the std::unordered_map containing the mapping of all Vertex instances to their in-degrees.
*
* @return A const reference to the std::unordered_map containing the mapping of all Vertex instances to their
* in-degrees
* @return A const reference to the std::unordered_map mapping all Vertex instances to their in-degrees
*/
auto const &getInDegrees() const;

/**
* Returns the std::unordered_map containing the mapping of all Vertex instances to their out-degrees.
*
* @return A const reference to the std::unordered_map containing the mapping of all Vertex instances to their
* out-degrees
* @return A const reference to the std::unordered_map mapping all Vertex instances to their out-degrees
*/
auto const &getOutDegrees() const;

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