sgc.py

"""
This code was modified from the GCN implementation in DGL examples.
Simplifying Graph Convolutional Networks
Paper: https://arxiv.org/abs/1902.07153
Code: https://github.com/Tiiiger/SGC
SGC implementation in DGL.
"""
import argparse, time, math
import numpy as np
import mxnet as mx
from mxnet import nd, gluon
from mxnet.gluon import nn
import dgl
from dgl.data import register_data_args
from dgl.data import CoraGraphDataset, CiteseerGraphDataset, PubmedGraphDataset
from dgl.nn.mxnet.conv import SGConv


def evaluate(model, g, features, labels, mask):
    pred = model(g, features).argmax(axis=1)
    accuracy = ((pred == labels) * mask).sum() / mask.sum().asscalar()
    return accuracy.asscalar()

def main(args):
    # load and preprocess dataset
    if args.dataset == 'cora':
        data = CoraGraphDataset()
    elif args.dataset == 'citeseer':
        data = CiteseerGraphDataset()
    elif args.dataset == 'pubmed':
        data = PubmedGraphDataset()
    else:
        raise ValueError('Unknown dataset: {}'.format(args.dataset))

    g = data[0]
    if args.gpu < 0:
        cuda = False
        ctx = mx.cpu(0)
    else:
        cuda = True
        ctx = mx.gpu(args.gpu)
        g = g.int().to(ctx)

    features = g.ndata['feat']
    labels = mx.nd.array(g.ndata['label'], dtype="float32", ctx=ctx)
    train_mask = g.ndata['train_mask']
    val_mask = g.ndata['val_mask']
    test_mask = g.ndata['test_mask']
    in_feats = features.shape[1]
    n_classes = data.num_labels
    n_edges = data.graph.number_of_edges()
    print("""----Data statistics------'
      #Edges %d
      #Classes %d
      #Train samples %d
      #Val samples %d
      #Test samples %d""" %
          (n_edges, n_classes,
              train_mask.sum().asscalar(),
              val_mask.sum().asscalar(),
              test_mask.sum().asscalar()))

    # add self loop
    g = dgl.remove_self_loop(g)
    g = dgl.add_self_loop(g)

    # create SGC model
    model = SGConv(in_feats,
                   n_classes,
                   k=2,
                   cached=True,
                   bias=args.bias)

    model.initialize(ctx=ctx)
    n_train_samples = train_mask.sum().asscalar()
    loss_fcn = gluon.loss.SoftmaxCELoss()

    # use optimizer
    print(model.collect_params())
    trainer = gluon.Trainer(model.collect_params(), 'adam',
            {'learning_rate': args.lr, 'wd': args.weight_decay})

    # initialize graph
    dur = []
    for epoch in range(args.n_epochs):
        if epoch >= 3:
            t0 = time.time()
        # forward
        with mx.autograd.record():
            pred = model(g, features)
            loss = loss_fcn(pred, labels, mx.nd.expand_dims(train_mask, 1))
            loss = loss.sum() / n_train_samples

        loss.backward()
        trainer.step(batch_size=1)

        if epoch >= 3:
            loss.asscalar()
            dur.append(time.time() - t0)
            acc = evaluate(model, g, features, labels, val_mask)
            print("Epoch {:05d} | Time(s) {:.4f} | Loss {:.4f} | Accuracy {:.4f} | "
                  "ETputs(KTEPS) {:.2f}". format(
                epoch, np.mean(dur), loss.asscalar(), acc, n_edges / np.mean(dur) / 1000))

    # test set accuracy
    acc = evaluate(model, g, features, labels, test_mask)
    print("Test accuracy {:.2%}".format(acc))


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='SGC')
    register_data_args(parser)
    parser.add_argument("--gpu", type=int, default=-1,
            help="gpu")
    parser.add_argument("--lr", type=float, default=0.2,
            help="learning rate")
    parser.add_argument("--bias", action='store_true', default=False,
            help="flag to use bias")
    parser.add_argument("--n-epochs", type=int, default=100,
            help="number of training epochs")
    parser.add_argument("--weight-decay", type=float, default=5e-6,
            help="Weight for L2 loss")
    args = parser.parse_args()
    print(args)

    main(args)