DESCRIPTION

Package: serofoi
Type: Package
Title: Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
Version: 0.0.9
Authors@R: 
    c(
        person(
            given = "Zulma M.",
            family = "Cucunubá",
            role = c("aut", "cre"),
            email = "zulma.cucunuba@javeriana.edu.co",
            comment = c(ORCID = "https://orcid.org/0000-0002-8165-3198")
        ),
        person(
            given = "Nicolás",
            family = "T. Domínguez",
            role = c("aut"),
            email = "ex-ntorres@javeriana.edu.co",
            comment = c(ORCID = "https://orcid.org/0009-0002-8484-1298")
        ),
        person(
            given = "Ben",
            family = "Lambert",
            role = c("aut")
        ),
        person(
            given = "Pierre",
            family = "Nouvellet",
            role = c("aut")
        )
    )
Contributor: Miguel Gámez, Geraldine Gómez, Jaime A. Pavlich-Mariscal
Maintainer: Zulma M. Cucunubá <zulma.cucunuba@javeriana.edu.co>
Description: R package to estimate time-varying Force-of-Infection of a given pathogen from population based sero-prevalence studies using a bayesian framework.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Depends: 
    R (>= 3.5.0)
Imports: 
    methods,
    Rcpp (>= 0.12.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.18.1),
    rstantools (>= 2.3.1),
    dplyr,
    bayesplot,
    config,
    cowplot,
    devtools,
    ggplot2,
    gsubfn,
    Hmisc,
    jsonlite,
    loo,
    purrr,
    qtl,
    reshape2,
    tidyverse,
    usethis,
    vdiffr (>= 1.0.0)    
LinkingTo: 
    BH (>= 1.66.0),
    Rcpp (>= 0.12.0),
    RcppEigen (>= 0.3.3.3.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.18.1),
    StanHeaders (>= 2.18.0)
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/Needs/website:
    epiverse-trace/epiversetheme
VignetteBuilder: knitr
URL: https://trace-lac.github.io/serofoi/
Additional_repositories:
    https://mc-stan.org/r-packages/
Remotes:
    tidyverse/purrr
Biarch: true
SystemRequirements: GNU make