From 5d91a3038240edaf3a293622a04889c730a3b9ca Mon Sep 17 00:00:00 2001
From: nlebovits <nissim.lebovits@vanderbilt.edu>
Date: Tue, 1 Oct 2024 12:56:43 -0400
Subject: [PATCH] add radon to precommit hook

---
 .pre-commit-config.yaml |  10 ++
 data/src/Pipfile        |   1 +
 data/src/Pipfile.lock   | 282 ++++++++++++++++++++--------------------
 3 files changed, 155 insertions(+), 138 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index bb934b8d..c54c5fe9 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -27,6 +27,16 @@ repos:
         language: system
         files: ^data/src/Pipfile$
 
+      # Radon MI and Halstead checks
+      - id: radon-check
+        name: Radon Maintainability and Halstead Checks
+        entry: |
+          bash -c 'radon mi -s {} | grep -E " - [CDEF] \(" && echo "Radon MI grade below B detected!" && exit 1 || echo "All MI grades are B or above."
+          radon hal {} -s | awk "/effort/ { if (\$3 > 2000) print FILENAME \": High Halstead effort:\" \$3 }"'
+        language: system
+        files: \.py$
+        exclude: ^data/src/awkde/
+
   - repo: https://github.com/jendrikseipp/vulture
     rev: 'v2.3' # or any later Vulture version
     hooks:
diff --git a/data/src/Pipfile b/data/src/Pipfile
index 1bb1af60..5c2b41e5 100644
--- a/data/src/Pipfile
+++ b/data/src/Pipfile
@@ -33,6 +33,7 @@ pyarrow = "*"
 tqdm = "*"
 vulture = "*"
 pylint = "*"
+radon = "*"
 
 [dev-packages]
 
diff --git a/data/src/Pipfile.lock b/data/src/Pipfile.lock
index 154e84d2..1d6d561e 100644
--- a/data/src/Pipfile.lock
+++ b/data/src/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "505ce10a0c0cedd58f603c5d5816895b103253cfdfd5a584bea510104414623d"
+            "sha256": "96d3d538b2f2943e62c3ec5ca3d96a8e55831888b586e1d916cc400b1161e330"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -185,19 +185,19 @@
         },
         "boto3": {
             "hashes": [
-                "sha256:b04087afd3570ba540fd293823c77270ec675672af23da9396bd5988a3f8128b",
-                "sha256:c31db992655db233d98762612690cfe60723c9e1503b5709aad92c1c564877bb"
+                "sha256:d2851aec8e9dc6937977acbe9a5124ecc31b3ad5f50a10cd9ae52636da3f52fa",
+                "sha256:d89c3459db89c5408e83219ab849ffd0146bc4285e75cdc67c6e45d390a12df2"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.35.26"
+            "version": "==1.35.30"
         },
         "botocore": {
             "hashes": [
-                "sha256:0b9dee5e4a3314e251e103585837506b17fcc7485c3c8adb61a9a913f46da1e7",
-                "sha256:19efc3a22c9df77960712b4e203f912486f8bcd3794bff0fd7b2a0f5f1d5712d"
+                "sha256:3bb9f9dde001608671ea74681ac3cec06bbbb10cba8cb8c1387a25e843075ce0",
+                "sha256:ab5350e8a50e48d371fa2d517d65c29a40c43788cb9a15387f93eac5a23df0fd"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.35.26"
+            "version": "==1.35.30"
         },
         "cachecontrol": {
             "hashes": [
@@ -420,7 +420,7 @@
                 "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44",
                 "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6'",
+            "markers": "python_version >= '3.5'",
             "version": "==0.4.6"
         },
         "comm": {
@@ -616,31 +616,31 @@
         },
         "debugpy": {
             "hashes": [
-                "sha256:0a1029a2869d01cb777216af8c53cda0476875ef02a2b6ff8b2f2c9a4b04176c",
-                "sha256:1cd04a73eb2769eb0bfe43f5bfde1215c5923d6924b9b90f94d15f207a402226",
-                "sha256:28ced650c974aaf179231668a293ecd5c63c0a671ae6d56b8795ecc5d2f48d3c",
-                "sha256:345d6a0206e81eb68b1493ce2fbffd57c3088e2ce4b46592077a943d2b968ca3",
-                "sha256:3df6692351172a42af7558daa5019651f898fc67450bf091335aa8a18fbf6f3a",
-                "sha256:4413b7a3ede757dc33a273a17d685ea2b0c09dbd312cc03f5534a0fd4d40750a",
-                "sha256:4fbb3b39ae1aa3e5ad578f37a48a7a303dad9a3d018d369bc9ec629c1cfa7408",
-                "sha256:55919dce65b471eff25901acf82d328bbd5b833526b6c1364bd5133754777a44",
-                "sha256:5b5c770977c8ec6c40c60d6f58cacc7f7fe5a45960363d6974ddb9b62dbee156",
-                "sha256:606bccba19f7188b6ea9579c8a4f5a5364ecd0bf5a0659c8a5d0e10dcee3032a",
-                "sha256:7b0fe36ed9d26cb6836b0a51453653f8f2e347ba7348f2bbfe76bfeb670bfb1c",
-                "sha256:7e4d594367d6407a120b76bdaa03886e9eb652c05ba7f87e37418426ad2079f7",
-                "sha256:8f913ee8e9fcf9d38a751f56e6de12a297ae7832749d35de26d960f14280750a",
-                "sha256:a697beca97dad3780b89a7fb525d5e79f33821a8bc0c06faf1f1289e549743cf",
-                "sha256:ad84b7cde7fd96cf6eea34ff6c4a1b7887e0fe2ea46e099e53234856f9d99a34",
-                "sha256:b2112cfeb34b4507399d298fe7023a16656fc553ed5246536060ca7bd0e668d0",
-                "sha256:b78c1250441ce893cb5035dd6f5fc12db968cc07f91cc06996b2087f7cefdd8e",
-                "sha256:c0a65b00b7cdd2ee0c2cf4c7335fef31e15f1b7056c7fdbce9e90193e1a8c8cb",
-                "sha256:c9f7c15ea1da18d2fcc2709e9f3d6de98b69a5b0fff1807fb80bc55f906691f7",
-                "sha256:db9fb642938a7a609a6c865c32ecd0d795d56c1aaa7a7a5722d77855d5e77f2b",
-                "sha256:dd3811bd63632bb25eda6bd73bea8e0521794cda02be41fa3160eb26fc29e7ed",
-                "sha256:e84c276489e141ed0b93b0af648eef891546143d6a48f610945416453a8ad406"
-            ],
-            "markers": "python_version >= '3.8'",
-            "version": "==1.8.5"
+                "sha256:0a85707c6a84b0c5b3db92a2df685b5230dd8fb8c108298ba4f11dba157a615a",
+                "sha256:22140bc02c66cda6053b6eb56dfe01bbe22a4447846581ba1dd6df2c9f97982d",
+                "sha256:30f467c5345d9dfdcc0afdb10e018e47f092e383447500f125b4e013236bf14b",
+                "sha256:3358aa619a073b620cd0d51d8a6176590af24abcc3fe2e479929a154bf591b51",
+                "sha256:43996632bee7435583952155c06881074b9a742a86cee74e701d87ca532fe833",
+                "sha256:538c6cdcdcdad310bbefd96d7850be1cd46e703079cc9e67d42a9ca776cdc8a8",
+                "sha256:567419081ff67da766c898ccf21e79f1adad0e321381b0dfc7a9c8f7a9347972",
+                "sha256:5d73d8c52614432f4215d0fe79a7e595d0dd162b5c15233762565be2f014803b",
+                "sha256:67479a94cf5fd2c2d88f9615e087fcb4fec169ec780464a3f2ba4a9a2bb79955",
+                "sha256:9fb8653f6cbf1dd0a305ac1aa66ec246002145074ea57933978346ea5afdf70b",
+                "sha256:b48892df4d810eff21d3ef37274f4c60d32cdcafc462ad5647239036b0f0649f",
+                "sha256:c1cef65cffbc96e7b392d9178dbfd524ab0750da6c0023c027ddcac968fd1caa",
+                "sha256:c931a9371a86784cee25dec8d65bc2dc7a21f3f1552e3833d9ef8f919d22280a",
+                "sha256:c9834dfd701a1f6bf0f7f0b8b1573970ae99ebbeee68314116e0ccc5c78eea3c",
+                "sha256:cdaf0b9691879da2d13fa39b61c01887c34558d1ff6e5c30e2eb698f5384cd43",
+                "sha256:db891b141fc6ee4b5fc6d1cc8035ec329cabc64bdd2ae672b4550c87d4ecb128",
+                "sha256:df5dc9eb4ca050273b8e374a4cd967c43be1327eeb42bfe2f58b3cdfe7c68dcb",
+                "sha256:e3a82da039cfe717b6fb1886cbbe5c4a3f15d7df4765af857f4307585121c2dd",
+                "sha256:e3e182cd98eac20ee23a00653503315085b29ab44ed66269482349d307b08df9",
+                "sha256:e4ce0570aa4aca87137890d23b86faeadf184924ad892d20c54237bcaab75d8f",
+                "sha256:f1e60bd06bb3cc5c0e957df748d1fab501e01416c43a7bdc756d2a992ea1b881",
+                "sha256:f7158252803d0752ed5398d291dee4c553bb12d14547c0e1843ab74ee9c31123"
+            ],
+            "markers": "python_version >= '3.8'",
+            "version": "==1.8.6"
         },
         "decorator": {
             "hashes": [
@@ -668,11 +668,11 @@
         },
         "dill": {
             "hashes": [
-                "sha256:3ebe3c479ad625c4553aca177444d89b486b1d84982eeacded644afc0cf797ca",
-                "sha256:c36ca9ffb54365bdd2f8eb3eff7d2a21237f8452b57ace88b1ac615b7e815bd7"
+                "sha256:468dff3b89520b474c0397703366b7b95eebe6303f108adf9b19da1f702be87a",
+                "sha256:81aa267dddf68cbfe8029c42ca9ec6a4ab3b22371d1c450abc54422577b4512c"
             ],
             "markers": "python_version >= '3.11'",
-            "version": "==0.3.8"
+            "version": "==0.3.9"
         },
         "dsnparse": {
             "hashes": [
@@ -1104,11 +1104,11 @@
         },
         "jaraco.functools": {
             "hashes": [
-                "sha256:3460c74cd0d32bf82b9576bbb3527c4364d5b27a21f5158a62aed6c4b42e23f5",
-                "sha256:c9d16a3ed4ccb5a889ad8e0b7a343401ee5b2a71cee6ed192d3f68bc351e94e3"
+                "sha256:70f7e0e2ae076498e212562325e805204fc092d7b4c17e0e86c959e249701a9d",
+                "sha256:ad159f13428bc4acbf5541ad6dec511f91573b90fba04df61dafa2a1231cf649"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==4.0.2"
+            "version": "==4.1.0"
         },
         "jedi": {
             "hashes": [
@@ -1469,6 +1469,13 @@
             ],
             "version": "==1.5.3"
         },
+        "mando": {
+            "hashes": [
+                "sha256:18baa999b4b613faefb00eac4efadcf14f510b59b924b66e08289aa1de8c3500",
+                "sha256:26ef1d70928b6057ee3ca12583d73c63e05c49de8972d620c278a7b206581a8a"
+            ],
+            "version": "==0.7.1"
+        },
         "mapbox": {
             "hashes": [
                 "sha256:13c0774d8e4a4de07c224db00f04f6da21a40c1df7febda1791444d95c3d3c2b",
@@ -1855,7 +1862,7 @@
                 "sha256:fac6e277a41163d27dfab5f4ec1f7a83fac94e170665a4a50191b545721c6521",
                 "sha256:fcd8f556cdc8cfe35e70efb92463082b7f43dd7e547eb071ffc36abc0ca4699b"
             ],
-            "markers": "python_version == '3.11'",
+            "markers": "python_version >= '3.10'",
             "version": "==2.1.1"
         },
         "ordered-set": {
@@ -2077,11 +2084,11 @@
         },
         "prompt-toolkit": {
             "hashes": [
-                "sha256:0d7bfa67001d5e39d02c224b663abc33687405033a8c422d0d675a5a13361d10",
-                "sha256:1e1b29cb58080b1e69f207c893a1a7bf16d127a5c30c9d17a25a5d77792e5360"
+                "sha256:d6623ab0477a80df74e646bdbc93621143f5caf104206aa29294d53de1a03d90",
+                "sha256:f49a827f90062e411f1ce1f854f2aedb3c23353244f8108b89283587397ac10e"
             ],
             "markers": "python_full_version >= '3.7.0'",
-            "version": "==3.0.47"
+            "version": "==3.0.48"
         },
         "proto-plus": {
             "hashes": [
@@ -2432,35 +2439,40 @@
         },
         "pyogrio": {
             "hashes": [
-                "sha256:019731a856a9abfe909e86f50eb13f8362f6742337caf757c54b7c8acfe75b89",
-                "sha256:083351b258b3e08b6c6085dac560bd321b68de5cb4a66229095da68d5f3d696b",
-                "sha256:13642608a1cd67797ae8b5d792b0518d8ef3eb76506c8232ab5eaa1ea1159dff",
-                "sha256:17420febc17651876d5140b54b24749aa751d482b5f9ef6267b8053e6e962876",
-                "sha256:1a495ca4fb77c69595747dd688f8f17bb7d2ea9cd86603aa71c7fc98cc8b4174",
-                "sha256:2829615cf58b1b24a9f96fea42abedaa1a800dd351c67374cc2f6341138608f3",
-                "sha256:2e98913fa183f7597c609e774820a149e9329fd2a0f8d33978252fbd00ae87e6",
-                "sha256:2f2ec57ab74785db9c2bf47c0a6731e5175595a13f8253f06fa84136adb310a9",
-                "sha256:30cbeeaedb9bced7012487e7438919aa0c7dfba18ac3d4315182b46eb3139b9d",
-                "sha256:3a2fcaa269031dbbc8ebd91243c6452c5d267d6df939c008ab7533413c9cf92d",
-                "sha256:3f964002d445521ad5b8e732a6b5ef0e2d2be7fe566768e5075c1d71398da64a",
-                "sha256:4a289584da6df7ca318947301fe0ba9177e7f863f63110e087c80ac5f3658de8",
-                "sha256:4da0b9deb380bd9a200fee13182c4f95b02b4c554c923e2e0032f32aaf1439ed",
-                "sha256:4e0f90a6c3771ee1f1fea857778b4b6a1b64000d851b819f435f9091b3c38c60",
-                "sha256:6a6fa2e8cf95b3d4a7c0fac48bce6e5037579e28d3eb33b53349d6e11f15e5a8",
-                "sha256:6dc94a67163218581c7df275223488ac9b31dc582ccd756da607c3338908566c",
-                "sha256:796e4f6a4e769b2eb6fea9a10546ea4bdee16182d1e29802b4d6349363c3c1d7",
-                "sha256:7fcafed24371fe6e23bcf5abebbb29269f8d79915f1dd818ac85453657ea714a",
-                "sha256:9440466c0211ac81f3417f274da5903f15546b486f76b2f290e74a56aaf0e737",
-                "sha256:959022f3ad04053f8072dc9a2ad110c46edd9e4f92352061ba835fc91df3ca96",
-                "sha256:d668cb10f2bf6ccd7c402f91e8b06290722dd09dbe265ae95b2c13db29ebeba0",
-                "sha256:e38c3c6d37cf2cc969407e4d051dcb507cfd948eb26c7b0840c4f7d7d4a71bd4",
-                "sha256:f47c9b6818cc0f420015b672d5dcc488530a5ee63e5ba35a184957b21ea3922a",
-                "sha256:f5d80eb846be4fc4e642cbedc1ed0c143e8d241653382ecc76a7620bbd2a5c3a",
-                "sha256:f8bf193269ea9d347ac3ddada960a59f1ab2e4a5c009be95dc70e6505346b2fc",
-                "sha256:fb04bd80964428491951766452f0071b0bc37c7d38c45ef02502dbd83e5d74a0"
+                "sha256:02e54bcfb305af75f829044b0045f74de31b77c2d6546f7aaf96822066147848",
+                "sha256:046eeeae12a03a3ebc3dc5ff5a87664e4f5fc0a4fb1ea5d5c45d547fa941072b",
+                "sha256:0a47f702d29808c557d2ebea8542c23903f021eae44e16838adef2ab4281c71b",
+                "sha256:11e6c71d12da6b445e77d0fc0198db1bd35a77e03a0685e45338cbab9ce02add",
+                "sha256:14fd3b72b4e2dc59e264607b265c742b0c5ec2ea9e748b115f742381b28dd373",
+                "sha256:19f18411bdf836d24cdc08b9337eb3ec415e4ac4086ba64516b36b73a2e88622",
+                "sha256:1abbcdd9876f30bebf1df8a0273f6cdeb29d03259290008275c7fddebe139f20",
+                "sha256:1fea7892f4633cab04d13563e47ec2e87dc2b5cd71b9546018d123184528c151",
+                "sha256:216d69cd77b2b4a0c9d7d449bc239f8b77f3d73f4a05d9c738a0745b236902d8",
+                "sha256:22d57495e835fe51b88da43dfbda606c07e1f6c3b849af0c3cfc18e17467641c",
+                "sha256:28cb139f8a5d0365ede602230104b407ae52bb6b55173c8d5a35424d28c4a2c5",
+                "sha256:2a3e09839590d71ff832aa95c4f23fa00a2c63c3de82c1fbd4fb8d265792acfc",
+                "sha256:2d6558b180e020f71ab7aa7f82d592ed3305c9f698d98f6d0a4637ec7a84c4ce",
+                "sha256:32d349600561459791a43f528a92f3e9343a59bdc9bc30b1be9376f0b80cbf16",
+                "sha256:3539596a76eb8a9d166d6f9d3f36731a8c5bd5c43901209d89dc66b9dc00f079",
+                "sha256:3a4c373281d7cbf560c5b61f8f3c7442103ad7f1c7ac4ef3a84572ed7a5dd2f6",
+                "sha256:44380f4d9245c776f432526e29ce4d29238aea26adad991803c4f453474f51d3",
+                "sha256:5b1a51431a27a1cb3e4e19558939c1423106e06e7b67d6285f4fba9c2d0a91b9",
+                "sha256:6166ae81462c257ed8e151c404e316642703813cf771c95ef8e11dcdf2581e47",
+                "sha256:7c02b207ea8cf09c501ea3e95d29152781a00d3c32267286bc36fa457c332205",
+                "sha256:82f7bd6a87bd2e9484bcb4c87ab94eee4c2f573ad148707431c8b341d7f13d99",
+                "sha256:a2f0b75f0077ce33256aec6278c2a9c3b79bf0637ddf4f93d3ab2609f0501d96",
+                "sha256:a99102037eead8ba491bc57825c1e395ee31c9956d7bff7b4a9e4fdbff3a13c2",
+                "sha256:c90478209537a31dcc65664a87a04c094bb0e08efe502908a6682b8cec0259bf",
+                "sha256:cea0187fcc2d574e52af8cfab041fa0a7ad71d5ef6b94b49a3f3d2a04534a27e",
+                "sha256:d0d74e91a9c0ff2f9abe01b556ff663977193b2d6922208406172d0fc833beff",
+                "sha256:ea96a1338ed7991735b955d3f84ad5f71b3bc070b6a7a42449941aedecc71768",
+                "sha256:eac90b2501656892c63bc500c12e71f3dbf7d66ddc5a7fb05cd480d25d1b7022",
+                "sha256:ec051cb568324de878828fae96379b71858933413e185148acb6c162851ab23c",
+                "sha256:eea82171bfc07fc778b8dc87b0cdc9ac06c389bc56b0c0b6f34bf9e45fb78c0e",
+                "sha256:fec45e1963b7058e5a1aa98598aed07c0858512c833d6aad2c672c3ec98bbf04"
             ],
-            "markers": "python_version >= '3.8'",
-            "version": "==0.9.0"
+            "markers": "python_version >= '3.9'",
+            "version": "==0.10.0"
         },
         "pyparsing": {
             "hashes": [
@@ -2472,36 +2484,33 @@
         },
         "pyproj": {
             "hashes": [
-                "sha256:18faa54a3ca475bfe6255156f2f2874e9a1c8917b0004eee9f664b86ccc513d3",
-                "sha256:1e9fbaf920f0f9b4ee62aab832be3ae3968f33f24e2e3f7fbb8c6728ef1d9746",
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@@ -2724,37 +2733,41 @@
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@@ -2791,11 +2804,11 @@
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@@ -3087,13 +3100,6 @@
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