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log2.txt
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(pyforce2020)bbir_interferometry 🔥 >./runall2.sh
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test01-Au coated slide check scanning range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test09-P4-QDs 800
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test11-P7-Empty Slide
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test02-B1
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test15-P1-Dronpa with Beads-Chop mode 0.44mW
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test03-S1-Dronpa with beads
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test19-Empty slide- same angle as test17
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test20-Empty slide- same angle as test17 new scan range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test14-P1-Dronpa with Beads-pump probe- check range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/Spectra
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test16-P3-Au Nanoshell-Chop mode 0.44mW
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test12-P6-Cy3
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test06-S4-QDs
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test18-Empty slide 8mm to the left of test17
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test04-S2-Blank beads
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test17-P4-QDs800-Chop mode 0.44mW
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test06-S4-QDs check scan range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test13-P5-Alexa555
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test07-B1 Repeat
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test10-P8-Empty Slide
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test05-S3-Au NanoShells
/gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test08-B1 Repeat
Found 63 files
Spectrum center at 1514.43 and max at 1500.00, 19394.18
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test01-Au coated slide check scanning range/ analysis to out1.png
saved data to out1.txt
Found 99 files
Spectrum center at 1702.87 and max at 1831.00, 6378.26
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test09-P4-QDs 800/ analysis to out2.png
saved data to out2.txt
Found 9 files
Spectrum center at 1567.41 and max at 1690.00, 18271.27
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test11-P7-Empty Slide/ analysis to out3.png
saved data to out3.txt
Found 99 files
Spectrum center at 1575.51 and max at 1691.00, 13781.73
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test02-B1/ analysis to out4.png
saved data to out4.txt
Found 99 files
Spectrum center at 1499.25 and max at 1521.00, 19379.02
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test15-P1-Dronpa with Beads-Chop mode 0.44mW/ analysis to out5.png
saved data to out5.txt
Found 99 files
Spectrum center at 1530.99 and max at 1501.00, 10002.41
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test03-S1-Dronpa with beads/ analysis to out6.png
saved data to out6.txt
Found 9 files
Spectrum center at 1556.65 and max at 1690.00, 15789.21
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test19-Empty slide- same angle as test17/ analysis to out7.png
saved data to out7.txt
Found 19 files
Spectrum center at 1549.93 and max at 1691.00, 15048.11
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test20-Empty slide- same angle as test17 new scan range/ analysis to out8.png
saved data to out8.txt
Found 9 files
Spectrum center at 1556.77 and max at 1360.00, 12866.93
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test14-P1-Dronpa with Beads-pump probe- check range/ analysis to out9.png
saved data to out9.txt
Found -1 files
negative dimensions are not allowed 0
Traceback (most recent call last):
File "interf_plot.py", line 177, in <module>
raise e
File "interf_plot.py", line 174, in <module>
main(args)
File "interf_plot.py", line 49, in main
min_t = np.zeros((N_scans),dtype=float)
ValueError: negative dimensions are not allowed
Found 99 files
Spectrum center at 1512.33 and max at 1671.00, 14164.92
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test16-P3-Au Nanoshell-Chop mode 0.44mW/ analysis to out10.png
saved data to out10.txt
Found 99 files
Spectrum center at 1563.92 and max at 1690.00, 13335.60
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test12-P6-Cy3/ analysis to out11.png
saved data to out11.txt
Found 2 files
diff requires input that is at least one dimensional 0
Traceback (most recent call last):
File "interf_plot.py", line 177, in <module>
raise e
File "interf_plot.py", line 174, in <module>
main(args)
File "interf_plot.py", line 57, in main
mean_dt[n] = np.mean(np.diff(t_temp))
File "<__array_function__ internals>", line 6, in diff
File "/home/zg54/.conda/envs/pyforce2020/lib/python3.6/site-packages/numpy/lib/function_base.py", line 1235, in diff
raise ValueError("diff requires input that is at least one dimensional")
ValueError: diff requires input that is at least one dimensional
Found 9 files
Spectrum center at 1579.22 and max at 1690.00, 20756.87
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test18-Empty slide 8mm to the left of test17/ analysis to out12.png
saved data to out12.txt
Found 99 files
Spectrum center at 1529.33 and max at 1500.00, 15963.18
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test04-S2-Blank beads/ analysis to out13.png
saved data to out13.txt
Found 99 files
Spectrum center at 1525.65 and max at 1561.00, 15577.19
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test17-P4-QDs800-Chop mode 0.44mW/ analysis to out14.png
saved data to out14.txt
Found 9 files
Spectrum center at 1692.48 and max at 1840.00, 9077.45
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test06-S4-QDs check scan range/ analysis to out15.png
saved data to out15.txt
Found 99 files
Spectrum center at 1588.45 and max at 1760.00, 14561.05
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test13-P5-Alexa555/ analysis to out16.png
saved data to out16.txt
Found 4 files
Spectrum center at 1591.37 and max at 1690.00, 21637.70
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test07-B1 Repeat/ analysis to out17.png
saved data to out17.txt
Found 9 files
Spectrum center at 1551.26 and max at 1501.00, 18547.28
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test10-P8-Empty Slide/ analysis to out18.png
saved data to out18.txt
Found 99 files
Spectrum center at 1505.66 and max at 1500.00, 10750.35
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test05-S3-Au NanoShells/ analysis to out19.png
saved data to out19.txt
Found 99 files
Spectrum center at 1566.28 and max at 1690.00, 14421.45
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-15/test08-B1 Repeat/ analysis to out20.png
saved data to out20.txt
mkdir: cannot create directory ‘2020-12-15’: File exists
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test06-S4 QDs check scanning range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/Spectra
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test07-S8 Empty slide check sacn range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test03-Parafilm new range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test11-S1 Dronpa Bead Chopl-Chop Mode-0.45mW
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test04-S3 Gold NanoShell-check scan range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test05-S3 Gold NanoShell-Chop Mode-0.45mW
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test10-B1
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test09-S7 Empty slide check sacn range
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test01-Empty slide
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test08-S8 Empty slide
/gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test02-Parafilm
Found 24 files
Spectrum center at 1482.65 and max at 1351.00, 1049.35
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test06-S4 QDs check scanning range/ analysis to out1.png
saved data to out1.txt
Found -1 files
negative dimensions are not allowed 0
Traceback (most recent call last):
File "interf_plot.py", line 177, in <module>
raise e
File "interf_plot.py", line 174, in <module>
main(args)
File "interf_plot.py", line 49, in main
min_t = np.zeros((N_scans),dtype=float)
ValueError: negative dimensions are not allowed
Found 2 files
Spectrum center at 1549.22 and max at 1508.00, 18094.28
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test07-S8 Empty slide check sacn range/ analysis to out2.png
saved data to out2.txt
Found 24 files
Spectrum center at 1657.63 and max at 1760.00, 9002.68
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test03-Parafilm new range/ analysis to out3.png
saved data to out3.txt
Found 69 files
Spectrum center at 1509.51 and max at 1820.00, 25521.87
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test11-S1 Dronpa Bead Chopl-Chop Mode-0.45mW/ analysis to out4.png
saved data to out4.txt
Found 7 files
Spectrum center at 1500.80 and max at 1493.00, 12508.13
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test04-S3 Gold NanoShell-check scan range/ analysis to out5.png
saved data to out5.txt
Found 99 files
Spectrum center at 1504.93 and max at 1990.00, 15129.88
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test05-S3 Gold NanoShell-Chop Mode-0.45mW/ analysis to out6.png
saved data to out6.txt
Found 49 files
Spectrum center at 1593.88 and max at 1760.00, 15259.06
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test10-B1/ analysis to out7.png
saved data to out7.txt
Found 49 files
Spectrum center at 1549.19 and max at 1691.00, 10957.39
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test09-S7 Empty slide check sacn range/ analysis to out8.png
saved data to out8.txt
Found 24 files
Spectrum center at 1425.48 and max at 1430.00, 16433.45
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test01-Empty slide/ analysis to out9.png
saved data to out9.txt
Found 49 files
Spectrum center at 1537.29 and max at 1511.00, 11372.93
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test08-S8 Empty slide/ analysis to out10.png
saved data to out10.txt
Found 9 files
Spectrum center at 1638.33 and max at 1760.00, 7694.92
saved /gpfs/scratch60/ganim/zg54/aerys/2020-12-16/test02-Parafilm/ analysis to out11.png
saved data to out11.txt
mkdir: cannot create directory ‘2020-12-16’: File exists