Features
- Added sequence similarity filter for MHC-I
- self-similarity (using kernel similarity)
- pathogen similarity (BLAST against pathogen-derived epitopes from IEDB)
- proteome similarity (BLAST against human proteome)
- Prioritization of neoantigens is now done separately for each variant type (speeds up the process)
- Update to recent version of ScanExitron (Thanks to @dolittle007)
- this version updated to recent version of regtools (v0.5.0) - which is available on Conda
- Singularity/Docker is not necessary anymore
- Added option to use strand information in exitron calling
- ScanNeo2 now uses conda environments for all tools (ditched Singularity/Docker)
Fix
- renamed similarity fields for pathogen and protein to more descriptive names
Contributors
dolittle007