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environment.yml
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environment.yml
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name: hgt
channels:
- anaconda
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- art=2016.06.05=h589041f_9
- atk-1.0=2.38.0=hd4edc92_1
- attrs=23.1.0=pyh71513ae_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- biopython=1.79=py37h540881e_2
- blas=1.0=mkl
- blast=2.12.0=hf3cf87c_4
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py37h540881e_1004
- bwa=0.7.17=h5bf99c6_8
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.11.17=hbcca054_0
- cachecontrol=0.12.11=pyhd8ed1ab_1
- cairo=1.16.0=h18b612c_1001
- certifi=2023.11.17=pyhd8ed1ab_0
- cffi=1.15.1=py37h43b0acd_1
- charset-normalizer=3.1.0=pyhd8ed1ab_0
- cryptography=3.4.8=py37hf1a17b8_1
- curl=7.87.0=h5eee18b_0
- cycler=0.11.0=pyhd8ed1ab_0
- cython=0.29.33=py37h6a678d5_0
- dbus=1.13.18=hb2f20db_0
- decorator=5.1.1=pyhd8ed1ab_0
- entrez-direct=16.2=he881be0_1
- et_xmlfile=1.1.0=pyhd8ed1ab_0
- ete3=3.1.2=pyh9f0ad1d_0
- exceptiongroup=1.1.1=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- fastp=0.23.2=h79da9fb_0
- fftw=3.3.10=nompi_hc118613_107
- flye=2.9.2=py37h595c7a6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- future=0.18.2=py37h89c1867_5
- gdk-pixbuf=2.42.10=h5eee18b_0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h0b41bf4_3
- glib=2.76.2=hfc55251_0
- glib-tools=2.76.2=hfc55251_0
- graphite2=1.3.14=h295c915_1
- graphviz=2.50.0=h8e749b2_2
- gsl=2.7=he838d99_0
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- gtk2=2.24.33=h90689f9_2
- gts=0.7.6=h64030ff_2
- harfbuzz=4.3.0=hf52aaf7_1
- hdmedians=0.14.2=py37hda87dfa_2
- htslib=1.11=hd3b49d5_2
- icu=58.2=hf484d3e_1000
- idna=3.4=pyhd8ed1ab_0
- imbalanced-learn=0.10.1=pyhd8ed1ab_0
- importlib-metadata=4.11.4=py37h89c1867_0
- importlib_metadata=1.5.0=py37_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- ipython=7.33.0=py37h89c1867_0
- isa-l=2.30.0=hd590300_6
- java-jdk=7.0.91=1
- jedi=0.18.2=pyhd8ed1ab_0
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- k8=0.2.5=hd03093a_2
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py37h7cecad7_0
- krb5=1.19.3=h3790be6_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.40=h41732ed_0
- libblas=3.9.0=12_linux64_mkl
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=12_linux64_mkl
- libclang=10.0.1=default_hb85057a_2
- libcurl=7.87.0=h91b91d3_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.12=h8f2d780_0
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgd=2.3.3=h6a678d5_2
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.76.2=hebfc3b9_0
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- libllvm10=10.0.1=he513fc3_3
- libnghttp2=1.46.0=hce63b2e_0
- libnsl=2.0.0=h7f98852_0
- libpng=1.6.39=h753d276_0
- libpq=12.9=h16c4e8d_3
- librsvg=2.54.4=h19fe530_0
- libsqlite=3.41.2=h2797004_1
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.2.0=hecacb30_2
- libtool=2.4.7=h27087fc_0
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- libxcb=1.15=h0b41bf4_0
- libxkbcommon=1.0.1=hfa300c1_0
- libxml2=2.9.14=h74e7548_0
- libxslt=1.1.35=h4e12654_0
- libzlib=1.2.13=h166bdaf_4
- llvm-openmp=16.0.3=h4dfa4b3_0
- lockfile=0.12.2=py_1
- lxml=4.9.1=py37h1edc446_0
- matplotlib-base=3.5.3=py37hf395dca_2
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- minimap2=2.17=h5bf99c6_4
- mkl=2021.4.0=h8d4b97c_729
- mkl-service=2.4.0=py37h402132d_0
- mkl_fft=1.3.1=py37hd3c417c_0
- mkl_random=1.2.2=py37h219a48f_0
- mpmath=1.3.0=pyhd8ed1ab_0
- msgpack-python=1.0.3=py37hd09550d_0
- munkres=1.1.4=pyh9f0ad1d_0
- natsort=8.3.1=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- networkx=2.6.3=pyhd3eb1b0_0
- ninja=1.11.1=h924138e_0
- nspr=4.35=h27087fc_0
- nss=3.89=he45b914_0
- numpy=1.21.5=py37h6c91a56_3
- numpy-base=1.21.5=py37ha15fc14_3
- olefile=0.46=pyh9f0ad1d_1
- openpyxl=3.0.10=py37h5eee18b_0
- openssl=1.1.1w=hd590300_0
- packaging=23.1=pyhd8ed1ab_0
- pandas=1.2.3=py37hdc94413_0
- pango=1.50.7=h05da053_0
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=2_h7f98852_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321h166bdaf_0
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-encode=3.19=pl5321h166bdaf_0
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h4ac6f70_6
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-parent=0.241=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321h166bdaf_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-storable=3.15=pl5321h166bdaf_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=7.2.0=py37h718be6c_2
- pip=23.1.2=pyhd8ed1ab_0
- pixman=0.38.0=h516909a_1003
- pluggy=1.0.0=py37h89c1867_3
- ply=3.11=py_1
- powerlaw=1.4.6=pyh9f0ad1d_1
- prompt-toolkit=3.0.38=pyha770c72_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.21=pyhd8ed1ab_0
- pydot=1.4.1=py37h06a4308_0
- pyfaidx=0.7.1=pyh5e36f6f_0
- pygments=2.15.1=pyhd8ed1ab_0
- pygraphviz=1.3=py37h14c3975_1
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py37h6a678d5_1
- pyqt5-sip=12.11.0=py37h6a678d5_1
- pysam=0.17.0=py37h45aed0b_0
- pysocks=1.7.1=py37h89c1867_5
- pytest=7.2.0=py37h89c1867_0
- python=3.7.12=hb7a2778_100_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.7=3_cp37m
- pytorch=1.10.2=cpu_py37hfa7516b_0
- pytz=2023.3=pyhd8ed1ab_0
- pyvcf3=1.0.3=pyhdfd78af_0
- qt-main=5.15.2=h327a75a_7
- qt-webengine=5.15.9=hd2b0992_4
- qtwebkit=5.212=h4eab89a_4
- readline=8.1=h46c0cb4_0
- requests=2.29.0=pyhd8ed1ab_0
- samtools=1.11=h6270b1f_0
- scikit-bio=0.5.6=py37h6323ea4_0
- scikit-learn=1.0.2=py37h51133e4_1
- scipy=1.7.3=py37h6c91a56_2
- seaborn=0.12.0=py37h06a4308_0
- seqkit=2.6.1=h9ee0642_0
- setuptools=59.8.0=py37h89c1867_1
- shasta=0.11.1=h9f5acd7_0
- sip=6.6.2=py37hd23a5d3_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.40.1=h5082296_0
- statsmodels=0.13.5=py37h7deecbd_1
- tbb=2021.8.0=hdb19cb5_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- torchvision=0.11.3=cpu_py37h164cc8f_2
- traitlets=5.9.0=pyhd8ed1ab_0
- typing_extensions=4.5.0=pyha770c72_0
- urllib3=1.26.15=pyhd8ed1ab_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- wget=1.20.3=ha56f1ee_1
- wheel=0.40.0=pyhd8ed1ab_0
- wtdbg=2.5=h5b5514e_2
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.6.12=h36c2ea0_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h3eb15da_6
- pip:
- betterbib==5.0.11
- cattrs==23.1.2
- latexcodec==2.0.1
- markdown-it-py==2.2.0
- mdurl==0.1.2
- ntplib==0.4.0
- platformdirs==3.10.0
- py-machineid==0.4.3
- pybtex==0.24.0
- pycountry==22.3.5
- pylatexenc==2.10
- pynacl==1.5.0
- python-license-manager==0.2.11
- pyyaml==6.0.1
- requests-cache==1.1.0
- rich==13.5.2
- rich-argparse==1.2.0
- tomli-w==1.0.0
- typing-extensions==4.7.1
- unidecode==1.3.6
- url-normalize==1.4.3
- x21==0.4.19
prefix: /home/wangshuai/miniconda3/envs/hgt