plot_claudogram() takes forever to complete

[bahyirou]

Hi everyone,

I managed to run lefse using the following command:
lefse <- run_lefse(phy_subset,
wilcoxon_cutoff = 0.01,
norm = "CPM",
group = "Protein",
kw_cutoff = 0.01,
multigrp_strat = TRUE,
lda_cutoff = 4
)

but after that when I try to plot a cladogram with lefse.cladogram <- plot_cladogram(lefse, color = c("cyan3", "darksalmon"))
it takes forever to run and does not finish running at all after leaving the computer on overnight.

I was wondering if anyone has faced the same issue? Or were there something wrong with my lefse object?

Thank you!