config.properties.DEFAULT

#specify the url to the zookeeper-solr address
server.url=localhost:2181

#specify the existent collection names - default first (use "," as separator)
collections=literature,csfgGff,csfgFasta,csfgAnnotation

#specify the name of existent shards (use "," as separator)
shards=localhost:8000/solr/shardname1_replicaname1,localhost:8983/solr/shardname2_replicaname2

############
# indexing #
############

#mapping of genome name and version
genomeMap.path=./genomeMap

#extension of the files to index use "," as separator
data.file.ext=.gz,.tar.gz,.nxml,.xml
#
#size of the document queue
indexing.queueSize=10000
#
#number of threads used to push documents to Solr
#indexing.nbPushThreads=5 means that 5 documents will be pushed to Solr at the same time
indexing.nbPushThreads=30

# fake push -- if set to true the documents will not be sent to the solr index
fake.push=false

# allows to set the commitWhithin parameter for documents when bioMine handles the commit instead of solr
# by default the commit will be applied only when deleting documents from the index
default.commitWhithinInMs=500

############
# querying #
############
#path to stopwords file to be removed from query
queryStopwords.path=./queryStopwords
#
#path to question words file to be considered in query
questionWords.path=./questionWords

##############
# entity     #
# annotation #
##############
dictionaries.path=./dictionaries
# list of entities to be annotated (separated by ",")
entities=accessionnumber,glycosylation,product_analysis,temperature,fungus,ph,enzyme