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run_ner_no_trainer.py
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#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning a 🤗 Transformers model on token classification tasks (NER, POS, CHUNKS) relying on the accelerate library
without using a Trainer.
"""
import argparse
import logging,multiprocessing
import math
import os
import random,string
from pathlib import Path
import datasets
import torch
from datasets import ClassLabel, load_dataset, load_metric
from torch.utils.data import DataLoader
from tqdm.auto import tqdm
import transformers
from accelerate import Accelerator
from huggingface_hub import Repository
from transformers import (
CONFIG_MAPPING,
MODEL_MAPPING,
AdamW,
AutoConfig,
AutoModelForTokenClassification,
AutoTokenizer,
DataCollatorForTokenClassification,
PretrainedConfig,
SchedulerType,
default_data_collator,
get_scheduler,
set_seed,
)
from transformers.file_utils import get_full_repo_name
from transformers.utils.versions import require_version
# from utils.process_func import *
# from utils.crf_bert import *
import pandas as pd
logger = logging.getLogger(__name__)
require_version("datasets>=1.8.0", "To fix: pip install -r examples/pytorch/token-classification/requirements.txt")
# You should update this to your particular problem to have better documentation of `model_type`
MODEL_CONFIG_CLASSES = list(MODEL_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
# cache path for your cached model, tokens, files etc...
# automatically downloaded files are saved in this path
CACHE_DIR = "/scratch/w/wluyliu/yananc/cache"
# labelled samples from Prodigy
INPUT_SAMPLES_DIR = "./datasets/sentence_level_tokens.json"
def parse_args():
parser = argparse.ArgumentParser(
description="Finetune a transformers model on a text classification task (NER) with accelerate library"
)
parser.add_argument(
"--dataset_name",
type=str,
default=None,
help="The name of the dataset to use (via the datasets library).",
)
parser.add_argument(
"--dataset_config_name",
type=str,
default=None,
help="The configuration name of the dataset to use (via the datasets library).",
)
parser.add_argument(
"--train_file", type=str, default=None, help="A csv or a json file containing the training data."
)
parser.add_argument(
"--validation_file", type=str, default=None, help="A csv or a json file containing the validation data."
)
parser.add_argument(
"--text_column_name",
type=str,
default=None,
help="The column name of text to input in the file (a csv or JSON file).",
)
parser.add_argument(
"--label_column_name",
type=str,
default=None,
help="The column name of label to input in the file (a csv or JSON file).",
)
parser.add_argument(
"--max_length",
type=int,
default=128,
help=(
"The maximum total input sequence length after tokenization. Sequences longer than this will be truncated,"
" sequences shorter will be padded if `--pad_to_max_length` is passed."
),
)
parser.add_argument(
"--debug_cnt",
type=int,
default=-1,
)
parser.add_argument(
"--k",
type=int,
default=0,
)
parser.add_argument(
"--pad_to_max_length",
action="store_true",
help="If passed, pad all samples to `max_length`. Otherwise, dynamic padding is used.",
)
parser.add_argument(
"--model_name_or_path",
type=str,
help="Path to pretrained model or model identifier from huggingface.co/models.",
required=True,
)
parser.add_argument(
"--config_name",
type=str,
default=None,
help="Pretrained config name or path if not the same as model_name",
)
parser.add_argument(
"--tokenizer_name",
type=str,
default=None,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--per_device_train_batch_size",
type=int,
default=8,
help="Batch size (per device) for the training dataloader.",
)
parser.add_argument(
"--per_device_eval_batch_size",
type=int,
default=8,
help="Batch size (per device) for the evaluation dataloader.",
)
parser.add_argument(
"--local_files_only",
action="store_true",
)
parser.add_argument(
"--da",
type=int, default=-1,
)
parser.add_argument(
"--da_ver",
type=str,
help="Only used for fewnerd dataset for da experiments",
)
# parser.add_argument(
# "--crf",
# action="store_true",
# )
parser.add_argument(
"--learning_rate",
type=float,
default=1e-5,
help="Initial learning rate (after the potential warmup period) to use.",
)
parser.add_argument("--weight_decay", type=float, default=0.0, help="Weight decay to use.")
parser.add_argument("--num_train_epochs", type=int, default=3, help="Total number of training epochs to perform.")
parser.add_argument(
"--max_train_steps",
type=int,
default=None,
help="Total number of training steps to perform. If provided, overrides num_train_epochs.",
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument(
"--binomial",
type=float,
default=1
)
parser.add_argument(
"--lr_scheduler_type",
type=SchedulerType,
default="linear",
help="The scheduler type to use.",
choices=["linear", "cosine", "cosine_with_restarts", "polynomial", "constant", "constant_with_warmup"],
)
parser.add_argument(
"--num_warmup_steps", type=int, default=0, help="Number of steps for the warmup in the lr scheduler."
)
parser.add_argument("--output_dir", type=str, default=None, help="Where to store the final model.")
parser.add_argument("--seed", type=int, default=None, help="A seed for reproducible training.")
parser.add_argument(
"--model_type",
type=str,
default=None,
help="Model type to use if training from scratch.",
choices=MODEL_TYPES,
)
parser.add_argument(
"--label_all_tokens",
action="store_true",
help="Setting labels of all special tokens to -100 and thus PyTorch will ignore them.",
)
parser.add_argument(
"--return_entity_level_metrics",
action="store_true",
help="Indication whether entity level metrics are to be returner.",
)
parser.add_argument(
"--task_name",
type=str,
default="ner",
choices=["ner", "pos", "chunk"],
help="The name of the task.",
)
# parser.add_argument(
# "--debug",
# action="store_true",
# help="Activate debug mode and run training only with a subset of data.",
# )
parser.add_argument("--push_to_hub", action="store_true", help="Whether or not to push the model to the Hub.")
parser.add_argument(
"--hub_model_id", type=str, help="The name of the repository to keep in sync with the local `output_dir`."
)
parser.add_argument("--hub_token", type=str, help="The token to use to push to the Model Hub.")
args = parser.parse_args()
# Sanity checks
if args.task_name is None and args.train_file is None and args.validation_file is None:
raise ValueError("Need either a task name or a training/validation file.")
else:
if args.train_file is not None:
extension = args.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if args.validation_file is not None:
extension = args.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
if args.push_to_hub:
assert args.output_dir is not None, "Need an `output_dir` to create a repo when `--push_to_hub` is passed."
return args
def main():
args = parse_args()
# Initialize the accelerator. We will let the accelerator handle device placement for us in this example.
accelerator = Accelerator()
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
logger.info(accelerator.state)
# Setup logging, we only want one process per machine to log things on the screen.
# accelerator.is_local_main_process is only True for one process per machine.
logger.setLevel(logging.INFO if accelerator.is_local_main_process else logging.ERROR)
if accelerator.is_local_main_process:
datasets.utils.logging.set_verbosity_warning()
transformers.utils.logging.set_verbosity_info()
else:
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
# If passed along, set the training seed now.
if args.seed is not None:
set_seed(args.seed)
# Handle the repository creation
if accelerator.is_main_process:
if args.push_to_hub:
if args.hub_model_id is None:
repo_name = get_full_repo_name(Path(args.output_dir).name, token=args.hub_token)
else:
repo_name = args.hub_model_id
repo = Repository(args.output_dir, clone_from=repo_name)
elif args.output_dir is not None:
os.makedirs(args.output_dir, exist_ok=True)
accelerator.wait_for_everyone()
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets for token classification task available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'tokens' or the first column if no column called
# 'tokens' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
# if args.dataset_name is not None and args.dataset_name != 'few_nerd_local':
# # Downloading and loading a dataset from the hub.
# raw_datasets = load_dataset(args.dataset_name, args.dataset_config_name, \
# cache_dir='/scratch/w/wluyliu/yananc/cache')
def tqi_replacement(example):
if list(set(example['tags'])) == ['O']:
return example
tokens_ = []
tags_ = []
i = 0
while i < len(example['tokens']):
# print(i, token, tag)
if example['tags'][i] != 'O':
df_candidates_mention = df_tags.loc[df_tags['tag'] == example['tags'][i]]
candidate = df_candidates_mention.sample(1)['span'].tolist()[0]
candidate_tokens = candidate.split()
for j in range(i, len(example['tokens'])):
if example['tags'][j] == 'O':
break
tokens_.extend(candidate_tokens)
tags_.extend(len(candidate_tokens) * [example['tags'][i]])
# print(example['tags'][i] , '==>',i)
if example['tags'][j] == 'O':
i = j
else:
i = j+1
else:
tokens_.append(example['tokens'][i])
tags_.append(example['tags'][i])
i += 1
# print('O==>',i)
# for token, tag in zip(tokens_, tags_):
# print(token, tag)
assert len(tokens_) == len(tags_)
return {'id':example['id'], 'tokens':tokens_, 'tags':tags_}
if args.dataset_name == 'tqi':
# load dict
# df_tags = pd.read_csv("/home/w/wluyliu/yananc/nlp4quantumpapers/datasets/QI-NERs.csv")
# ixl = {i:j for i,j in enumerate(df_tags['tag'].drop_duplicates().tolist()) }
# ixl_rev = {j:i for i,j in enumerate(df_tags['tag'].drop_duplicates().tolist()) }
file_list={}
file_list['train_test'] = INPUT_SAMPLES_DIR
raw_datasets = datasets.load_dataset('json', data_files=file_list, \
cache_dir=CACHE_DIR)
ids = list(set([ii['id'] for ii in raw_datasets['train_test']]))
tags = set()
for ii in raw_datasets['train_test']:
tags.update(ii['tags'])
print("TQI tags set:", tags)
# assert set(list(ixl.values())+ ['O']) == tags
# for ii in range(len(raw_datasets['train_test'])):
# print(ii)
# example = raw_datasets['train_test'][ii]
# example_ = tqi_replacement(example)
# randomly split the labelling samples into train and test split
random.shuffle(ids)
split_ix = int(len(ids)*0.8)
print("ids:{} split_ix:{}".format(len(ids), split_ix))
# if args.debug_cnt > 0:
# assert args.debug_cnt < split_ix
# ids_train = ids[:args.debug_cnt]
# else:
ids_train = ids[:split_ix]
ids_test = ids[split_ix:]
train_syn_ll = []
if args.k > 0:
for _ in range(args.k): #
train_syn_ll.append(raw_datasets\
.filter(lambda example: example['id'] in ids_train, num_proc= multiprocessing.cpu_count())['train_test']\
.map(lambda example: tqi_replacement(example)))
train_syn_ll.append(raw_datasets\
.filter(lambda example: example['id'] in ids_train, num_proc= multiprocessing.cpu_count())['train_test'])
raw_datasets['train'] = datasets.concatenate_datasets(train_syn_ll)
raw_datasets['test'] = raw_datasets\
.filter(lambda example: example['id'] in ids_test, num_proc= multiprocessing.cpu_count())['train_test']
# this branch is not for TQI, ignore it
elif args.dataset_name == 'few_nerd_local':
file_list = {}
for dsn in ['dev','test','train']:
file_list[dsn] = '/gpfs/fs0/scratch/w/wluyliu/yananc/few_nerd_supervised/{}.json'.format(dsn)
file_list['da'] = '/scratch/w/wluyliu/yananc/fewnerd_augmented/{}.json'.format(args.da_ver)
raw_datasets_ = datasets.load_dataset('json', data_files=file_list, \
cache_dir=CACHE_DIR)
# file_list = {}
# file_list['da'] = '/gpfs/fs0/scratch/w/wluyliu/yananc/few_nerd_supervised/da_coarse_binomal_{}.json'.format(args.binomial)
# raw_datasets_['da'] = datasets.load_dataset('json', data_files=file_list, cache_dir='/scratch/w/wluyliu/yananc/cache')['da']#.rename_column("tags_coarse", "tags")
def map_func(example):
# tag_fine_ix = []
# tag_coarse_ix = []
tags_coarse = []
for tag in example['tags']:
# tag_fine_ix.append(tag_map_fine[tag])
if tag != 'O':
# tag_coarse_ix.append(tag_map_coarse[tag.split('-')[0]])
tags_coarse.append(tag.split('-')[0])
else:
# tag_coarse_ix.append(tag_map_coarse[tag])
tags_coarse.append(tag)
example['tags_coarse'] = tags_coarse
example['tags_fine'] = example['tags']
# example['tag_fine_ix'] = tag_fine_ix
# example['tag_coarse_ix'] = tag_coarse_ix
for ii, jj in example.items():
if ii == 'id':
continue
assert len(jj) == len(example['tokens'])
return example
raw_datasets = raw_datasets_.map(map_func,
batched=False,
num_proc= multiprocessing.cpu_count() ,
load_from_cache_file= False, remove_columns=['tags'],
desc = "Running ix mapping ==>")
if args.debug_cnt > 0:
# raw_datasets['train_dev'] = datasets.concatenate_datasets([raw_datasets["train"], raw_datasets["dev"]])
random_ids = random.sample(raw_datasets['train']['id'], args.debug_cnt)
raw_datasets['train'] = raw_datasets['train'].filter(lambda example: example['id'] in random_ids, num_proc= multiprocessing.cpu_count())
raw_datasets['da'] = raw_datasets['da'].filter(lambda example: example['id'] in random_ids, num_proc= multiprocessing.cpu_count())
if args.da:
raw_datasets['train'] = datasets.concatenate_datasets([raw_datasets["train"], raw_datasets["da"]]).shuffle()
if 'dev' in raw_datasets.keys():
raw_datasets['test'] = datasets.concatenate_datasets([raw_datasets["test"], raw_datasets["dev"]])
column_names = raw_datasets["train"].column_names
features = raw_datasets["train"].features
# In the event the labels are not a `Sequence[ClassLabel]`, we will need to go through the dataset to get the
# unique labels.
def get_label_list(labels):
unique_labels = set()
for label in labels:
unique_labels = unique_labels | set(label)
label_list = list(unique_labels)
label_list.sort()
return label_list
# If the labels are of type ClassLabel, they are already integers and we have the map stored somewhere.
# Otherwise, we have to get the list of labels manually.
labels_are_int = isinstance(features[args.label_column_name].feature, ClassLabel)
if labels_are_int:
label_list = features[args.label_column_name].feature.names
label_to_id = {i: i for i in range(len(label_list))}
else:
label_list = get_label_list(raw_datasets["train"][args.label_column_name])
label_to_id = {l: i for i, l in enumerate(label_list)}
num_labels = len(label_list)
# Load pretrained model and tokenizer
#
# In distributed training, the .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
if args.config_name:
config = AutoConfig.from_pretrained(args.config_name, num_labels=num_labels, \
cache_dir=CACHE_DIR, local_files_only=args.local_files_only)
elif args.model_name_or_path:
config = AutoConfig.from_pretrained(args.model_name_or_path, num_labels=num_labels, \
cache_dir=CACHE_DIR, local_files_only=args.local_files_only)
else:
config = CONFIG_MAPPING[args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
tokenizer_name_or_path = args.tokenizer_name if args.tokenizer_name else args.model_name_or_path
if not tokenizer_name_or_path:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script."
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
if config.model_type in {"gpt2", "roberta"}:
tokenizer = AutoTokenizer.from_pretrained(tokenizer_name_or_path, use_fast=True, add_prefix_space=True, \
cache_dir=CACHE_DIR, local_files_only=args.local_files_only)
else:
tokenizer = AutoTokenizer.from_pretrained(tokenizer_name_or_path, use_fast=True, \
cache_dir=CACHE_DIR, local_files_only=args.local_files_only)
if args.model_name_or_path:
# if args.crf and not args.lstm:
# model = BertCRF.from_pretrained(args.model_name_or_path, num_labels=num_labels, \
# cache_dir="/scratch/w/wluyliu/yananc/cache", local_files_only=args.local_files_only)
# elif args.crf and args.lstm:
# model = BertLstmCRF.from_pretrained(args.model_name_or_path, num_labels=num_labels, \
# cache_dir="/scratch/w/wluyliu/yananc/cache", local_files_only=args.local_files_only)
# else:
model = AutoModelForTokenClassification.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config, \
cache_dir=CACHE_DIR, local_files_only=args.local_files_only
)
else:
logger.info("Training new model from scratch")
model = AutoModelForTokenClassification.from_config(config)
model.resize_token_embeddings(len(tokenizer))
# Model has labels -> use them.
if model.config.label2id != PretrainedConfig(num_labels=num_labels).label2id:
if list(sorted(model.config.label2id.keys())) == list(sorted(label_list)):
# Reorganize `label_list` to match the ordering of the model.
if labels_are_int:
label_to_id = {i: int(model.config.label2id[l]) for i, l in enumerate(label_list)}
label_list = [model.config.id2label[i] for i in range(num_labels)]
else:
label_list = [model.config.id2label[i] for i in range(num_labels)]
label_to_id = {l: i for i, l in enumerate(label_list)}
else:
logger.warning(
"Your model seems to have been trained with labels, but they don't match the dataset: ",
f"model labels: {list(sorted(model.config.label2id.keys()))}, dataset labels: {list(sorted(label_list))}."
"\nIgnoring the model labels as a result.",
)
# Set the correspondences label/ID inside the model config
model.config.label2id = {l: i for i, l in enumerate(label_list)}
model.config.id2label = {i: l for i, l in enumerate(label_list)}
# Map that sends B-Xxx label to its I-Xxx counterpart
b_to_i_label = []
for idx, label in enumerate(label_list):
if label.startswith("B-") and label.replace("B-", "I-") in label_list:
b_to_i_label.append(label_list.index(label.replace("B-", "I-")))
else:
b_to_i_label.append(idx)
# Preprocessing the datasets.
# First we tokenize all the texts.
padding = "max_length" if args.pad_to_max_length else False
# Tokenize all texts and align the labels with them.
def tokenize_and_align_labels(examples):
tokenized_inputs = tokenizer(
examples[args.text_column_name],
max_length=args.max_length,
padding=padding,
truncation=True,
# We use this argument because the texts in our dataset are lists of words (with a label for each word).
is_split_into_words=True,
)
labels = []
for i, label in enumerate(examples[args.label_column_name]):
word_ids = tokenized_inputs.word_ids(batch_index=i)
previous_word_idx = None
label_ids = []
for word_idx in word_ids:
# Special tokens have a word id that is None. We set the label to -100 so they are automatically
# ignored in the loss function.
if word_idx is None:
label_ids.append(-100)
# We set the label for the first token of each word.
elif word_idx != previous_word_idx:
label_ids.append(label_to_id[label[word_idx]])
# For the other tokens in a word, we set the label to either the current label or -100, depending on
# the label_all_tokens flag.
else:
if args.label_all_tokens:
label_ids.append(b_to_i_label[label_to_id[label[word_idx]]])
else:
label_ids.append(-100)
previous_word_idx = word_idx
labels.append(label_ids)
tokenized_inputs["labels"] = labels
return tokenized_inputs
with accelerator.main_process_first():
processed_raw_datasets = raw_datasets.map(
tokenize_and_align_labels,
batched=True,
remove_columns=raw_datasets["train"].column_names,
desc="Running tokenizer on dataset",
)
train_dataset = processed_raw_datasets['train']
test_dataset = processed_raw_datasets["test"]
# Log a few random samples from the training set:
for index in random.sample(range(len(train_dataset)), 3):
logger.info(f"Sample {index} of the training set: {train_dataset[index]}.")
# DataLoaders creation:
if args.pad_to_max_length:
# If padding was already done ot max length, we use the default data collator that will just convert everything
# to tensors.
data_collator = default_data_collator
else:
# Otherwise, `DataCollatorForTokenClassification` will apply dynamic padding for us (by padding to the maximum length of
# the samples passed). When using mixed precision, we add `pad_to_multiple_of=8` to pad all tensors to multiple
# of 8s, which will enable the use of Tensor Cores on NVIDIA hardware with compute capability >= 7.5 (Volta).
data_collator = DataCollatorForTokenClassification(
tokenizer, pad_to_multiple_of=(8 if accelerator.use_fp16 else None)
)
train_dataloader = DataLoader(
train_dataset, shuffle=True, collate_fn=data_collator, batch_size=args.per_device_train_batch_size
)
eval_dataloader = DataLoader(test_dataset, collate_fn=data_collator, batch_size=args.per_device_eval_batch_size)
# Optimizer
# Split weights in two groups, one with weight decay and the other not.
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate)
# Use the device given by the `accelerator` object.
device = accelerator.device
model.to(device)
# Prepare everything with our `accelerator`.
model, optimizer, train_dataloader, eval_dataloader = accelerator.prepare(
model, optimizer, train_dataloader, eval_dataloader
)
# Note -> the training dataloader needs to be prepared before we grab his length below (cause its length will be
# shorter in multiprocess)
# Scheduler and math around the number of training steps.
num_update_steps_per_epoch = math.ceil(len(train_dataloader) / args.gradient_accumulation_steps)
if args.max_train_steps is None:
args.max_train_steps = args.num_train_epochs * num_update_steps_per_epoch
else:
args.num_train_epochs = math.ceil(args.max_train_steps / num_update_steps_per_epoch)
lr_scheduler = get_scheduler(
name=args.lr_scheduler_type,
optimizer=optimizer,
num_warmup_steps=args.num_warmup_steps,
num_training_steps=args.max_train_steps,
)
# Metrics
metric = datasets.load_metric("seqeval", cache_dir=CACHE_DIR, experiment_id=''.join(random.choice(string.ascii_uppercase + string.digits) for _ in range(8)))
# https://github.com/huggingface/datasets/blob/master/metrics/seqeval/seqeval.py
def get_labels(predictions, references):
# Transform predictions and references tensos to numpy arrays
if device.type == "cpu":
y_pred = predictions.detach().clone().numpy()
y_true = references.detach().clone().numpy()
else:
y_pred = predictions.detach().cpu().clone().numpy()
y_true = references.detach().cpu().clone().numpy()
# Remove ignored index (special tokens)
true_predictions = [
[label_list[p] for (p, l) in zip(pred, gold_label) if l != -100]
for pred, gold_label in zip(y_pred, y_true)
]
true_labels = [
[label_list[l] for (p, l) in zip(pred, gold_label) if l != -100]
for pred, gold_label in zip(y_pred, y_true)
]
return true_predictions, true_labels
# to get the result in terms of the metrics to evaluate the model's performance
def compute_metrics():
results = metric.compute()
if args.return_entity_level_metrics:
# Unpack nested dictionaries
final_results = {}
for key, value in results.items():
if isinstance(value, dict):
for n, v in value.items():
final_results[f"{key}_{n}"] = v
else:
final_results[key] = value
return final_results
else:
return {
"precision": round(results["overall_precision"], 4),
"recall": round(results["overall_recall"], 4),
"f1": round(results["overall_f1"],4)
}
# Train!
total_batch_size = args.per_device_train_batch_size * accelerator.num_processes * args.gradient_accumulation_steps
logger.info("***** Running training *****")
logger.info(f" Num examples = {len(train_dataset)}")
logger.info(f" Num Epochs = {args.num_train_epochs}")
logger.info(f" Instantaneous batch size per device = {args.per_device_train_batch_size}")
logger.info(f" Total train batch size (w. parallel, distributed & accumulation) = {total_batch_size}")
logger.info(f" Gradient Accumulation steps = {args.gradient_accumulation_steps}")
logger.info(f" Total optimization steps = {args.max_train_steps}")
# Only show the progress bar once on each machine.
progress_bar = tqdm(range(args.max_train_steps), disable=not accelerator.is_local_main_process)
completed_steps = 0
best_f1 = 0
for epoch in range(args.num_train_epochs):
model.train()
for step, batch in enumerate(train_dataloader):
outputs = model(**batch)
loss = outputs.loss
loss = loss / args.gradient_accumulation_steps
accelerator.backward(loss)
if step % args.gradient_accumulation_steps == 0 or step == len(train_dataloader) - 1:
optimizer.step()
lr_scheduler.step()
optimizer.zero_grad()
progress_bar.update(1)
completed_steps += 1
if completed_steps >= args.max_train_steps:
break
model.eval()
for step, batch in enumerate(eval_dataloader):
with torch.no_grad():
outputs = model(**batch)
predictions = outputs.logits.argmax(dim=-1)
labels = batch["labels"]
if not args.pad_to_max_length: # necessary to pad predictions and labels for being gathered
predictions = accelerator.pad_across_processes(predictions, dim=1, pad_index=-100)
labels = accelerator.pad_across_processes(labels, dim=1, pad_index=-100)
predictions_gathered = accelerator.gather(predictions)
labels_gathered = accelerator.gather(labels)
preds, refs = get_labels(predictions_gathered, labels_gathered)
metric.add_batch(
predictions=preds,
references=refs,
) # predictions and preferences are expected to be a nested list of labels, not label_ids
# eval_metric = metric.compute()
eval_metric = compute_metrics()
# accelerator.print(f"epoch {epoch}:", args.label_column_name, args.debug_cnt, eval_metric)
print("roberta_ner_report ==>", 'epoch:', epoch, eval_metric)
if eval_metric['f1'] > best_f1:
best_f1 = eval_metric['f1']
if args.push_to_hub and epoch < args.num_train_epochs - 1:
accelerator.wait_for_everyone()
unwrapped_model = accelerator.unwrap_model(model)
unwrapped_model.save_pretrained(args.output_dir, save_function=accelerator.save)
if accelerator.is_main_process:
tokenizer.save_pretrained(args.output_dir)
repo.push_to_hub(
commit_message=f"Training in progress epoch {epoch}", blocking=False, auto_lfs_prune=True
)
if args.output_dir is not None:
accelerator.wait_for_everyone()
unwrapped_model = accelerator.unwrap_model(model)
unwrapped_model.save_pretrained(args.output_dir, save_function=accelerator.save)
if accelerator.is_main_process:
tokenizer.save_pretrained(args.output_dir)
if args.push_to_hub:
repo.push_to_hub(commit_message="End of training", auto_lfs_prune=True)
print("roberta_ner_report_final ==>", best_f1)
if __name__ == "__main__":
main()