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<!DOCTYPE html>
<html>
<head>
<title> InQuBATE Workshop: Computational Problems in Single Cell Transcriptomics and Multi-omics</title>
<style>
/* Custom CSS styles */
body {
font-family: Arial, sans-serif;
margin: 0;
}
.banner {
background-image: url('banner.jpg');
background-size: cover;
background-position: center;
background-repeat: no-repeat;
height: 500px;
display: flex;
justify-content: center;
align-items: center;
}
h1 {
color: #FFFFFF;
text-align: center;
}
p {
color: #333333;
margin: 20px;
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ul {
color: #333333;
margin: 20px;
}
a {
color: #FFC107;
text-decoration: none;
}
/* Additional styling for agenda */
.agenda-item {
margin-bottom: 10px;
}
.session-title {
font-weight: bold;
}
</style>
</head>
<body>
<div class="banner">
<h1> </h1>
<h1 style="font-size:60px;"> <br> <br> <br> InQuBATE Workshop: Computational Problems in Single Cell Transcriptomics and Multi-omics</h1>
</div>
<p>
Welcome to the workshop on Computational Problems in Single Cell Transcriptomics and Multi-omics. This workshop is hosted by the Georgia Tech <a href="https://sites.gatech.edu/inqubate/">InQuBATE Training Program </a> and organized by <a href="https://xiuweizhang.wordpress.com/">Dr. Xiuwei Zhang</a> from the <a href="https://cse.gatech.edu/">School of Computational Science and Engineering</a>.
</p>
<h2>Topics</h2>
<ul>
<li>Learning cell identities using transcriptome or multi-omics data which includes clustering, trajectory inference, lineage tracing, batch correction, multi-omics data integration, incorporation of spatial locations from spatial data.</li>
<li>Gene-wise analysis including differential expression analysis, gene regulatory network inference using gene expression or multi-omics data, inference of cell-cell interactions. </li>
<li>Benchmarking computational methods using simulation tools. </li>
</ul>
<h2>Event Details</h2>
<ul>
<li><strong>Date:</strong> August 7-8, 2023</li>
<li><strong>Location:</strong> Suddath Seminar Room 1128, <a href="https://goo.gl/maps/xihjX6UJ63r59cDc8"> Petit Biotech Building </a> </li>
</ul>
<h2>Agenda</h2>
<div class="agenda-item">
<h3 class="session-title">August 7: 9:00 - 2:15 </h3>
<ul>
<li>9:30-9:50 Self-introduction</li>
<li>9:50-10:45 Talk 1: Overview, data imputation, denoising, dimensionality reduction</li>
<li>10:45-11:00 Break</li>
<li>11:00-11:30 Talk 2: Dimensionality reduction, clustering of scRNA-seq data, differential expression</li>
<li>11:30-12:15 Talk 3: Trajectory inference and lineage tracing</li>
<li>12:15-1:15 Lunch</li>
<li>1:15-2:15 Discussion</li>
</ul>
</div>
<div class="agenda-item">
<h3 class="session-title">August 8: 8:45 - 2:00</h3>
<ul>
<li>8:45-9:15 Breakfast</li>
<li>9:15-10:00 Talk 4: Data integration</li>
<li>10:00-10:45 Talk 5: Inference of GRNs and CCIs</li>
<li>10:45-11:15 Coffee break and networking</li>
<li>11:15-12:15 Talk 6: Benchmarking computational methods using simulated data</li>
<li>12:15-1:15 Lunch</li>
<li>1:15-2:00 Discussion</li>
</ul>
</div>
<!-- Add more workshop sessions as needed -->
<h2>Registration</h2>
<p>
To register for the workshop, please fill out the registration form <a href="https://forms.office.com/r/kRf9YeAQXN">here</a>. Registration deadline is July 24th, 2023. Seats are limited and will be allocated on a first-come, first-served basis.
</p>
<h2>Contact Information</h2>
<p>
For any inquiries or further information, please contact us at [email protected].
</p>
</body>
</html>