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pdb_read.html
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<html>
<head>
<title>
PDB_READ - Read Protein Database File
</title>
</head>
<body bgcolor="#EEEEEE" link="#CC0000" alink="#FF3300" vlink="#000055">
<h1 align = "center">
PDB_READ <br> Read Protein Database File
</h1>
<hr>
<p>
<b>PDB_READ</b>
is a FORTRAN90 library which
reads the ATOM records from a Protein Data Bank (PDB) file.
</p>
<h3 align = "center">
Licensing:
</h3>
<p>
The computer code and data files described and made available on this web page
are distributed under
<a href = "../../txt/gnu_lgpl.txt">the GNU LGPL license.</a>
</p>
<h3 align = "center">
Related Data and Programs:
</h3>
<p>
<a href = "../../data/pdb/pdb.html">
PDB</a>,
a data directory which
contains a description and examples of the PDB format.
</p>
<p>
<a href = "../../f_src/pdb_extract/pdb_extract.html">
PDB_EXTRACT</a>,
a FORTRAN90 program which
can extract certain records from a PDB file.
</p>
<p>
<a href = "../../f_src/pdb_to_xyz/pdb_to_xyz.html">
PDB_TO_XYZ</a>,
a FORTRAN90 program which
reads the coordinates of atoms in a PDB file
and writes them out as an
<a href = "../../data/xyz/xyz.html">XYZ file</a>.
</p>
<p>
<a href = "../../f_src/xyz_to_pdb/xyz_to_pdb.html">
XYZ_TO_PDB</a>,
a FORTRAN90 program which
reads an XYZ file and
writes the data as coordinates of atoms in a PDB file.
</p>
<h3 align = "center">
Reference:
</h3>
<p>
<ol>
<li>
<a href = "http://www.rcsb.org/pdb/">
http://www.rcsb.org/pdb/</a> <br>
The Protein Data Bank Home Page.
</li>
</ol>
</p>
<h3 align = "center">
Source Code:
</h3>
<p>
<ul>
<li>
<a href = "pdb_read.f90">pdb_read.f90</a>, the source code;
</li>
<li>
<a href = "pdb_read.sh">pdb_read.sh</a>,
commands to compile the source code;
</li>
</ul>
</p>
<h3 align = "center">
Examples and Tests:
</h3>
<p>
<ul>
<li>
<a href = "pdb_read_prb.f90">pdb_read_prb.f90</a>, the calling
program;
</li>
<li>
<a href = "pdb_read_prb.sh">pdb_read_prb.sh</a>,
commands to compile, link and run the calling program;
</li>
<li>
<a href = "pdb_read_prb_output.txt">pdb_read_prb_output.txt</a>, the sample output.
</li>
<li>
<a href = "../../data/pdb/7tln.pdb">7tln.pdb</a>,
a sample PDB file.
</li>
</ul>
</p>
<h3 align = "center">
List of Routines:
</h3>
<p>
<ul>
<li>
<b>CH_CAP</b> capitalizes a single character.
</li>
<li>
<b>GET_UNIT</b> returns a free FORTRAN unit number.
</li>
<li>
<b>PDB_CHECK</b> truncates the PDB size data to internal maxima, if neccessary.
</li>
<li>
<b>PDB_INIT</b> initializes data associated with a given PDB file.
</li>
<li>
<b>PDB_PRINT_COORD</b> prints out the COORD array.
</li>
<li>
<b>PDB_PRINT_PRTATM</b> prints out the PRTATM array.
</li>
<li>
<b>PDB_READ</b> reads the ATOM records in a PDB file.
</li>
<li>
<b>PDB_SUMMARY</b> prints a summary of the data read from a PDB file.
</li>
<li>
<b>S_EQI</b> is a case insensitive comparison of two strings for equality.
</li>
<li>
<b>TIMESTAMP</b> prints the current YMDHMS date as a time stamp.
</li>
</ul>
</p>
<p>
You can go up one level to <a href = "../f_src.html">
the FORTRAN90 source codes</a>.
</p>
<hr>
<i>
Last revised on 07 January 2006.
</i>
<!-- John Burkardt -->
</body>
</html>