From 87f7d1f56e2dc0e01f52108652b0a294aab98cc1 Mon Sep 17 00:00:00 2001
From: wkumler <wkumler@uw.edu>
Date: Thu, 30 Nov 2023 13:20:40 -0800
Subject: [PATCH] Dropping MSnbase from DESCRIPTION

I just can't pass checks with it. It requires netcdf which is a complicated install on Linux and it's not worth it for a few lines in the single vignette.
---
 .github/workflows/r-check-cran.yml | 5 -----
 DESCRIPTION                        | 1 -
 2 files changed, 6 deletions(-)

diff --git a/.github/workflows/r-check-cran.yml b/.github/workflows/r-check-cran.yml
index 94b1f8c..1c81485 100644
--- a/.github/workflows/r-check-cran.yml
+++ b/.github/workflows/r-check-cran.yml
@@ -62,9 +62,6 @@ jobs:
           do
             eval sudo $cmd
           done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
-          ## Force-install netcdf since it's missed by the system requirements
-          ## but required for mzR & MSnbase
-          sudo -s apt-get install -y libnetcdf-dev
 
       - name: Install BiocManager
         run: |
@@ -74,8 +71,6 @@ jobs:
       - name: Install dependencies
         run: |
           install.packages("stringi")
-          BiocManager::install("ncdf4")
-          BiocManager::install("mzR")
           remotes::install_deps(dependencies = TRUE, repos=BiocManager::repositories())
           remotes::install_cran("rcmdcheck")
         shell: Rscript {0}
diff --git a/DESCRIPTION b/DESCRIPTION
index 8267c7f..52f906e 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -39,7 +39,6 @@ Suggests:
     RSQLite,
     reticulate,
     BiocParallel,
-    MSnbase,
     Spectra,
     arrow,
     microbenchmark,