setup.py

from setuptools import setup, find_packages

version = "Unknown"
for line in open("metasv/_version.py"):
    if line.startswith("__version__"):
        version = line.strip().split("=")[1].strip().replace('"', '')

print version
setup(
    name='MetaSV',
    version=version,
    description='MetaSV: An accurate and integrative structural-variant caller for next generation sequencing',
    author='Bina Technologies',
    author_email='bina.rd@roche.com',
    url='https://github.com/bioinform/metasv',
    packages=find_packages(),
    install_requires=["cython", "pysam", "pybedtools", "pyvcf"],
    package_data={"metasv": ["resources/*"]},
    scripts=['scripts/run_metasv.py',
             'scripts/svtool_to_vcf.py',
             'scripts/annotate_vcf_bam.py',
             'scripts/run_metasv_age.py',
             'scripts/run_metasv_bed2vcf.py',
             'scripts/run_metasv_sc_analysis.py'],
    dependency_links=[
        "https://pypi.python.org/packages/source/p/pysam/pysam-0.7.7.tar.gz"]
)