diff --git a/.DS_Store b/.DS_Store deleted file mode 100644 index 628dc353f4f..00000000000 Binary files a/.DS_Store and /dev/null differ diff --git a/assets/.DS_Store b/assets/.DS_Store deleted file mode 100644 index db86215074c..00000000000 Binary files a/assets/.DS_Store and /dev/null differ diff --git a/assets/img/.DS_Store b/assets/img/.DS_Store deleted file mode 100644 index 088e66ae0f3..00000000000 Binary files a/assets/img/.DS_Store and /dev/null differ diff --git a/feed.xml b/feed.xml index ec0312d1398..35c1bbf2f1d 100644 --- a/feed.xml +++ b/feed.xml @@ -1 +1 @@ -Jekyll2024-09-20T17:03:11-07:00https://pfocr.wikipathways.org/feed.xmlPathway Figure OCRMining the published literature for pathway figures and making their contents accessible for science. \ No newline at end of file +Jekyll2024-09-20T18:28:29-07:00https://pfocr.wikipathways.org/feed.xmlPathway Figure OCRMining the published literature for pathway figures and making their contents accessible for science. \ No newline at end of file diff --git a/rmd/stats.html b/rmd/stats.html index 41923ab297b..36d294652a2 100644 --- a/rmd/stats.html +++ b/rmd/stats.html @@ -109,10 +109,10 @@

Read PFOCR .rds files

Read in files

-
figs <- readRDS(file.path(local.path,"pfocr_figures.rds"))
-genes <- readRDS(file.path(local.path,"pfocr_genes.rds"))
-chems <- readRDS(file.path(local.path,"pfocr_chemicals.rds"))
-dis <- readRDS(file.path(local.path,"pfocr_diseases.rds"))
+
figs <- readRDS(file.path(local.path,"pfocr_figures_draft.rds"))
+genes <- readRDS(file.path(local.path,"pfocr_genes_draft.rds"))
+chems <- readRDS(file.path(local.path,"pfocr_chemicals_draft.rds"))
+dis <- readRDS(file.path(local.path,"pfocr_diseases_draft.rds"))
 

 
 
Contents and counts

@@ -156,8 +156,8 @@ 
Contents and counts

 row.names(data) = c("Genes", "Chemicals", "Diseases")
-

The Pathway Figure OCR project has identified 105451 pathway figures -from 89737 published papers.

+

The Pathway Figure OCR project has identified 110408 pathway figures +from 93057 published papers.

@@ -171,21 +171,21 @@

Contents and counts

- - - + + + - + - + - + - +
Genes4,534,575147613 (ncbigene)18441 (human)4,687,583147974 (ncbigene)18586 (human)
Chemicals319,846346,094 14212 (mesh)4120 (chebi)6785 (chebi)
Diseases43,21844,598 1632 (mesh)204 (doid)673 (doid)
diff --git a/rmd/stats_files/figure-markdown_github/plot-1.png b/rmd/stats_files/figure-markdown_github/plot-1.png index b9a3e73489f..69004fd7207 100644 Binary files a/rmd/stats_files/figure-markdown_github/plot-1.png and b/rmd/stats_files/figure-markdown_github/plot-1.png differ diff --git a/stats.html b/stats.html index 7989fd78e4b..654e7df2fdd 100644 --- a/stats.html +++ b/stats.html @@ -109,10 +109,10 @@

Read PFOCR .rds files

Read in files

-
figs <- readRDS(file.path(local.path,"pfocr_figures.rds"))
-genes <- readRDS(file.path(local.path,"pfocr_genes.rds"))
-chems <- readRDS(file.path(local.path,"pfocr_chemicals.rds"))
-dis <- readRDS(file.path(local.path,"pfocr_diseases.rds"))
+
figs <- readRDS(file.path(local.path,"pfocr_figures_draft.rds"))
+genes <- readRDS(file.path(local.path,"pfocr_genes_draft.rds"))
+chems <- readRDS(file.path(local.path,"pfocr_chemicals_draft.rds"))
+dis <- readRDS(file.path(local.path,"pfocr_diseases_draft.rds"))
 

 
 
Contents and counts

@@ -156,8 +156,8 @@ 
Contents and counts

 row.names(data) = c("Genes", "Chemicals", "Diseases")
-

The Pathway Figure OCR project has identified 103009 pathway figures -from 87705 published papers.

+

The Pathway Figure OCR project has identified 110408 pathway figures +from 93057 published papers.

@@ -171,21 +171,21 @@

Contents and counts

- - - + + + - - - + + + - - - + + +
Genes4,426,921146866 (ncbigene)18383 (human)4,687,583147974 (ncbigene)18586 (human)
Chemicals309,76113979 (mesh)4085 (chebi)346,09414212 (mesh)6785 (chebi)
Diseases41,7381602 (mesh)201 (doid)44,5981632 (mesh)673 (doid)