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I did git clone https://github.com/widdowquinn/find_differential_primers
Here is the result of git log | head:
commit 54e4fb3d63d2610559d93249a5e389dad1caed90
Merge: 3e3863d cb830b4
Author: Leighton Pritchard <[email protected]>
Date: Fri Dec 18 14:20:49 2020 +0000
Merge pull request #56 from nick-youngblut/diagnostic_primers
added ArgumentDefaultsHelpFormatter to all parsers; post-hoc changes to keep to project style (PEP8) by LP.
commit cb830b4d83263a414440c727670cf32247959be2
I did conda install --file requirements.txt -y and conda install --file requirements-thirdparty-primer3_237.txt -y with no problems. Then I did python3 setup.py install --prefix ~.
This installed into my ~/bin/
ls ~/bin
delta_filter_wrapper.py f2py f2py3 f2py3.10 pdp pdp.py pdp_mafft_wrapper.py tqdm
All good so far. But when I try to execute ~/bin/pdp I get this:
~/bin/pdp --help
Traceback (most recent call last):
File "/data/djs217/bin/pdp", line 33, in <module>
sys.exit(load_entry_point('diagnostic-primers==0.2.0.dev0', 'console_scripts', 'pdp')())
File "/data/djs217/bin/pdp", line 22, in importlib_load_entry_point
for entry_point in distribution(dist_name).entry_points
File "/usr/lib/python3.10/importlib/metadata/__init__.py", line 969, in distribution
return Distribution.from_name(distribution_name)
File "/usr/lib/python3.10/importlib/metadata/__init__.py", line 548, in from_name
raise PackageNotFoundError(name)
importlib.metadata.PackageNotFoundError: No package metadata was found for diagnostic-primers
Any ideas what's gone wrong? I could not find installation instructions for this version of pdp/find_differential_primers, only for the stable version.
The text was updated successfully, but these errors were encountered:
davidjstudholme
changed the title
pdp installation problem
Minor problem with documentation for installation of pdp
Nov 5, 2023
davidjstudholme
changed the title
Minor problem with documentation for installation of pdp
importlib.metadata.PackageNotFoundError: No package metadata was found for diagnostic-primers
Nov 5, 2023
I did git clone
https://github.com/widdowquinn/find_differential_primers
Here is the result of
git log | head
:I did
conda install --file requirements.txt -y
andconda install --file requirements-thirdparty-primer3_237.txt -y
with no problems. Then I didpython3 setup.py install --prefix ~
.This installed into my ~/bin/
All good so far. But when I try to execute
~/bin/pdp
I get this:Any ideas what's gone wrong? I could not find installation instructions for this version of pdp/find_differential_primers, only for the stable version.
The text was updated successfully, but these errors were encountered: