deploy.yml

# Python: "3.8", "3.9", "3.10"
# Older version do not support f-strings
# OS: ubuntu-20.04, ubuntu-latest
# OS: macOS-10.15, macos-11 (, macos-latest)
# OS: windows-2019


name: Python package

on:
  push:
    branches: [ deploy ]
  # pull_request:
  #   branches: [ deploy ]

jobs:
  # Explore-GitHub-Actions:
  #   runs-on: ubuntu-latest
  #   steps:
  #     - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
  #     - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
  #     - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
  #     - name: Check out repository code
  #       uses: actions/checkout@v2
  #     - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
  #     - run: echo "🖥️ The workflow is now ready to test your code on the runner."
  #     - name: List files in the repository
  #       run: |
  #         ls ${{ github.workspace }}
  #     - run: echo "🍏 This job's status is ${{ job.status }}."

  # # Does not produce manylinux that is required for twine
  # build_unix:
  #   name: Build wheels on ${{ matrix.os }}
  #   runs-on: ${{ matrix.os }}
  #   strategy:
  #     fail-fast: true
  #     matrix:
  #       # os: [ubuntu-20.04,ubuntu-18.04]
  #       # python-version: ["3.8","3.9","3.10"]
  #       os: [ubuntu-18.04]
  #       python-version: ["3.9"]
  #   steps:
  #   - uses: actions/checkout@v2
  #   - name: Set up Python ${{ matrix.python-version }}
  #     uses: actions/setup-python@v2
  #     with:
  #       python-version: ${{ matrix.python-version }}
  #   - name: Install dependencies
  #     run: |
  #       python -m pip install --upgrade pip
  #       python -m pip install pytest pytest-benchmark build
  #       python -m pip install numpy scipy matplotlib>=3.0.0
  #       if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
  #   - name: Compile and install
  #     run: |
  #       python -m pip install . -v
  #       ls ${{ github.workspace }}/build || true
  #   - name: Test installation
  #     run : |
  #       mv dtaidistance dtaidistance_pkg
  #       python ./util/check_installation.py
  #       mv dtaidistance_pkg dtaidistance
  #   - name: Test with pytest
  #     run: |
  #       mv dtaidistance dtaidistance_pkg
  #       pytest --ignore=venv --benchmark-skip
  #       mv dtaidistance_pkg dtaidistance
  #   - name: Build
  #     run: |
  #       python -m build
  #   - name: Store wheels
  #     uses: actions/upload-artifact@v2
  #     with:
  #       name: wheels
  #       path: dist/*.whl

  build_unix:
    name: Build wheels on ${{ matrix.os }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: true
      matrix:
        # os: [ubuntu-20.04,ubuntu-18.04]
        # python-version: ["3.8","3.9","3.10"]
        os: [ubuntu-22.04]
        # cibuildwheel will automatically provide all Python versions
        python-version: ["3.9"]
    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install cibuildwheel==2.3.1
    - name: Build wheel
      run: |
        pwd
        ls
        python -m cibuildwheel --output-dir dist/
      env:
        CIBW_BUILD_VERBOSITY: 2
        # cp36-* and cp37-* do not support f-strings
        CIBW_SKIP: cp36-* pp* *-manylinux_i686 *-musllinux_i686 *-musllinux_x86_64
        CIBW_TEST_EXTRAS: "dev"
        CIBW_TEST_COMMAND: pytest --ignore=venv --benchmark-skip {project}/tests
    - name: Store wheels
      uses: actions/upload-artifact@v2
      with:
        name: wheels
        path: dist/*.whl


  build_macos:
    name: Build wheels on ${{ matrix.os }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: true
      matrix:
        os: [macos-11, macos-12, macos-13, macos-14]
        python-version: ["3.8","3.9","3.10", "3.11", "3.12"]
    steps:
    - uses: actions/checkout@v2
    - name: Install OpenMP
      run: |
        # OpenMP libraries are not installed by default on macos
        clang --version
        clang --version | grep "\(13\.\|14\.\|15\.\)"
        # hardcoded, not ideal
        # https://mac.r-project.org/openmp/
        # This includes only the dynamic library
        curl -O https://mac.r-project.org/openmp/openmp-13.0.0-darwin21-Release.tar.gz
        sudo tar fvxz openmp-13.0.0-darwin21-Release.tar.gz -C /
        ls /usr/local/lib
        ls /usr/local/include
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install pytest pytest-benchmark build
        python -m pip install numpy scipy matplotlib>=3.0.0
        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
    - name: Compile and install
      run: |
        export LDFLAGS="-L/usr/local/lib"
        export CPPFLAGS="-I/usr/local/include"
        python -m pip install . -v
        ls ${{ github.workspace }}/build || true
    - name: Test installation
      run : |
        mv dtaidistance dtaidistance_pkg
        python ./util/check_installation.py
        mv dtaidistance_pkg dtaidistance
    - name: Test with pytest
      run: |
        export LDFLAGS="-L/usr/local/lib"
        export CPPFLAGS="-I/usr/local/include"
        mv dtaidistance dtaidistance_pkg
        pytest --ignore=venv --benchmark-skip
        mv dtaidistance_pkg dtaidistance
    - name: Build
      run: |
        python -m build
    - name: Store wheels
      uses: actions/upload-artifact@v2
      with:
        name: wheels
        path: dist/*.whl

  build_macos_arm:
    name: Build wheels on ${{ matrix.os }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: true
      matrix:
        os: [macos-13-arm64, macos-14-arm64]
        python-version: ["3.11", "3.12"]
    steps:
    - uses: actions/checkout@v2
    - name: Install OpenMP
      run: |
        # OpenMP libraries are not installed by default on macos
        clang --version
        clang --version | grep "\(13\.\|14\.\|15\.\)"
        # hardcoded, not ideal
        # https://mac.r-project.org/openmp/
        # This includes only the dynamic library
        curl -O https://mac.r-project.org/openmp/openmp-13.0.0-darwin21-Release.tar.gz
        sudo tar fvxz openmp-13.0.0-darwin21-Release.tar.gz -C /
        ls /usr/local/lib
        ls /usr/local/include
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install pytest pytest-benchmark build
        python -m pip install numpy scipy matplotlib>=3.0.0
        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
    - name: Compile and install
      run: |
        export LDFLAGS="-L/usr/local/lib"
        export CPPFLAGS="-I/usr/local/include"
        python -m pip install . -v
        ls ${{ github.workspace }}/build || true
    - name: Test installation
      run : |
        mv dtaidistance dtaidistance_pkg
        python ./util/check_installation.py
        mv dtaidistance_pkg dtaidistance
    - name: Test with pytest
      run: |
        export LDFLAGS="-L/usr/local/lib"
        export CPPFLAGS="-I/usr/local/include"
        mv dtaidistance dtaidistance_pkg
        pytest --ignore=venv --benchmark-skip
        mv dtaidistance_pkg dtaidistance
    - name: Build
      run: |
        python -m build
    - name: Store wheels
      uses: actions/upload-artifact@v2
      with:
        name: wheels
        path: dist/*.whl


  build_windows:
    name: Build wheels on ${{ matrix.os }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: true
      matrix:
        os: [windows-2019, windows-2022]
        python-version: ["3.8","3.9","3.10", "3.11", "3.12"]
    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install pytest pytest-benchmark pytest-env build cython
        python -m pip install numpy scipy matplotlib>=3.0.0
    - name: Compile and install
      run: |
        python -m pip install . -v
        ls ${{ github.workspace }}/build || true
    - name: Test installation
      run : |
        mv dtaidistance dtaidistance_pkg
        python ./util/check_installation.py
        mv dtaidistance_pkg dtaidistance
    - name: Test with pytest
      run: |
        mv dtaidistance dtaidistance_pkg
        pytest --ignore=venv --benchmark-skip -c pytest-noviz.ini
        mv dtaidistance_pkg dtaidistance
    - name: Build
      run: |
        python -m build
    - name: Store wheels
      uses: actions/upload-artifact@v2
      with:
        name: wheels
        path: dist/*.whl

  build_sdist:
    name: Prepare source distribution
    runs-on: ubuntu-latest
    steps:
      - name: Checkout
        uses: actions/checkout@v1
      - name: Setup Python
        uses: actions/setup-python@v2
        with:
          python-version: '3.9'
      - name: Build
        run: |
          python -m pip install build
          python -m build --sdist
      - name: Store artifacts
        uses: actions/upload-artifact@v2
        with:
          name: wheels
          path: dist/*.tar.gz


  upload_wheels:
    name: Upload wheels to PyPi
    runs-on: ubuntu-latest
    # upload to PyPI on every tag starting with 'v'
    # if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')
    needs: [build_unix,build_macos,build_windows,build_sdist]

    steps:
      - uses: actions/download-artifact@v2
        with:
          name: wheels
          path: dist

      - name: Publish package to PyPI
        uses: pypa/gh-action-pypi-publish@release/v1
        with:
          user: __token__
          password: ${{ secrets.PYPI_API_TOKEN }}
          packages_dir: dist/

  # test_upload_wheels:
  #   name: Upload wheels to TestPyPi
  #   runs-on: ubuntu-latest
  #   # upload to PyPI on every tag starting with 'v'
  #   # if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')
  #   needs: [build_unix,build_macos,build_windows,build_sdist]
  #   # needs: [build_unix]
  #   steps:
  #     - uses: actions/download-artifact@v2
  #       with:
  #         name: wheels
  #         path: dist

  #     - name: Publish package to TestPyPI
  #       uses: pypa/gh-action-pypi-publish@release/v1
  #       with:
  #         user: __token__
  #         password: ${{ secrets.TEST_PYPI_API_TOKEN_TEST }}
  #         repository_url: https://test.pypi.org/legacy/