DESCRIPTION

Package: MultiAssayWorkshop
Title: Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
Version: 3.18.1
Authors@R: c(person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
    role = c("aut", "cre")),
    person("Ludwig", "Geistlinger", email = "Ludwig.Geistlinger@sph.cuny.edu",
    role = "ctb"),
    person("Levi", "Waldron", email = "lwaldron.research@gmail.com",
    role = "aut"))
Description: In this workshop, attendees will learn to access and analyze data
  through the curatedTCGAData and cBioPortalData R/Bioconductor packages.
  Workshop attendees will learn how to create and work with a
  MultiAssayExperiment data container to manage multiple genomic experiments.
  Some knowledge of R and basic Bioconductor structures, such as
  SummarizedExperiment, is required.
Depends: R (>= 4.3.0)
Imports:
  MultiAssayExperiment,
  GenomicRanges,
  RaggedExperiment,
  curatedTCGAData,
  cBioPortalData,
  learnr,
  GenomicDataCommons,
  SummarizedExperiment,
  SingleCellExperiment,
  SingleCellMultiModal,
  TCGAutils,
  UpSetR,
  mirbase.db,
  TxDb.Hsapiens.UCSC.hg19.knownGene,
  org.Hs.eg.db,
  AnnotationFilter,
  EnsDb.Hsapiens.v86,
  shiny,
  survival,
  survminer,
  TENxIO,
  pheatmap
Suggests:
  kableExtra,
  knitr,
  readr,
  tibble,
  scran,
  scater,
  uwot,
  rmarkdown,
  pkgdown,
  BiocStyle
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
URL: https://waldronlab.github.io/MultiAssayWorkshop/,
  ghcr.io/waldronlab/multiassayworkshop
BugReports: https://github.com/waldronlab/MultiAssayWorkshop/issues/new
VignetteBuilder: knitr
DockerImage: ghcr.io/waldronlab/multiassayworkshop:latest