From b0aed4c2a564db20bd4f038f8193df08179a35d0 Mon Sep 17 00:00:00 2001
From: walaj <jeremiah.wala@gmail.com>
Date: Thu, 15 Feb 2018 20:02:28 -0500
Subject: [PATCH] Fix for issue #23

---
 SeqLib/BamReader.h | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/SeqLib/BamReader.h b/SeqLib/BamReader.h
index 74f20afde..eb69d809c 100644
--- a/SeqLib/BamReader.h
+++ b/SeqLib/BamReader.h
@@ -59,8 +59,14 @@ namespace SeqLib {
 
     // close this bam
     bool close() {
+
       if (!fp)
 	return false;
+
+      // close the cram reference
+      if (fp->fp.cram)
+	cram_close(fp->fp.cram);
+
       fp.reset();
       idx.reset();
       hts_itr.reset();