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Support zarr formats natively #6

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keller-mark opened this issue Dec 31, 2020 · 1 comment
Open

Support zarr formats natively #6

keller-mark opened this issue Dec 31, 2020 · 1 comment

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@keller-mark
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We need zarr support in R to be able to write expression matrices, and potentially to write hdf5 or other objects directly to zarr representations (like AnnData.write_zarr) See https://github.com/gdkrmr/zarr-R

There is also a lot of interest in other places zarr-developers/community#18 https://spacetx-starfish.readthedocs.io/en/stable/help_and_reference/working_with_starfish_outputs/IntensityTable/#serialization

@keller-mark keller-mark changed the title Work on zarr-R Support zarr formats natively Jan 11, 2022
@keller-mark keller-mark transferred this issue from vitessce/vitessceR Feb 17, 2022
@wolfganghuber
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There is now the Rarr package by Mike Smith: https://github.com/grimbough/Rarr
It's been submitted to Bioconductor and should pop up there sooner or later.

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