biosimulations_cd.yml

name: Submit simulator version from GHCR to BioSimulators
on:
  workflow_dispatch:
    inputs:
      tag_name:
        description: 'version tag'
        required: true
        default: 7.4.0.23

jobs:
  submit:
    runs-on: ubuntu-20.04
    steps:
      # Submit to BioSimulators registry
      - name: Submit to BioSimulators registry
        run: |
          set -ux
          export SPEC_URL=https://github.com/${{ github.repository }}/releases/download/${{ github.event.inputs.tag_name }}/biosimulators.json
          docker pull ghcr.io/virtualcell/biosimulators_vcell:${{ github.event.inputs.tag_name }}
          IMAGE_DIGEST=$(docker image inspect ghcr.io/virtualcell/biosimulators_vcell:${{ github.event.inputs.tag_name }} | jq -r '.[0].RepoDigests[0]' | cut -d "@" -f 2-)
          curl \
            -X POST \
            -u ${{ secrets.ACTION_USER }}:${{ secrets.ACTION_TOKEN }} \
            -H "Accept: application/vnd.github.v3+json" \
            https://api.github.com/repos/biosimulators/Biosimulators/issues \
            -d "{\"labels\": [\"Validate/submit simulator\"], \"title\": \"Submit VCell ${{ github.event.inputs.tag_name }}\", \"body\": \"---\nid: vcell\nversion: ${{ github.event.inputs.tag_name }}\nspecificationsUrl: $SPEC_URL\nspecificationsPatch:\n  version: ${{ github.event.inputs.tag_name }}\n  image:\n    url: ghcr.io/virtualcell/biosimulators_vcell:${{ github.event.inputs.tag_name }}\n    digest: \\\"${IMAGE_DIGEST}\\\"\nvalidateImage: true\ncommitSimulator: true\n\n---\"}"