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v2.8.5 major package update and cleanup
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,6 @@ | ||
Package: Seurat.utils | ||
Title: Seurat.utils - utility functions for Seurat | ||
Version: 2.8.0 | ||
Version: 2.8.5 | ||
Authors@R: | ||
person("Abel", "Vertesy", , "[email protected]", role = c("aut", "cre")) | ||
Author: Abel Vertesy <[email protected]> [aut, cre] | ||
|
@@ -14,21 +14,26 @@ BugReports: https://github.com/vertesy/Seurat.utils/issues | |
Depends: | ||
CodeAndRoll2, | ||
ggExpress, | ||
ggplot2, | ||
magrittr, | ||
Seurat, | ||
Stringendo | ||
Stringendo, | ||
tidyverse | ||
Imports: | ||
checkmate, | ||
cowplot, | ||
dplyr, | ||
EnhancedVolcano, | ||
foreach, | ||
fs, | ||
future, | ||
ggcorrplot, | ||
ggplot2, | ||
ggpubr, | ||
ggrepel, | ||
grDevices, | ||
gplots, | ||
harmony, | ||
HGNChelper, | ||
htmlwidgets, | ||
job, | ||
MarkdownHelpers, | ||
MarkdownReports, | ||
Matrix, | ||
|
@@ -38,27 +43,24 @@ Imports: | |
princurve, | ||
qs, | ||
R.utils, | ||
RColorBrewer, | ||
readr, | ||
ReadWriter, | ||
reshape2, | ||
rstudioapi, | ||
scales, | ||
SeuratObject, | ||
SoupX, | ||
sparseMatrixStats, | ||
stringr, | ||
tibble, | ||
tictoc, | ||
tidyverse, | ||
vroom | ||
tictoc | ||
Suggests: | ||
clusterProfiler, | ||
DatabaseLinke.R, | ||
EnhancedVolcano, | ||
fs, | ||
gplots, | ||
princurve, | ||
RColorBrewer, | ||
SoupX | ||
enrichplot, | ||
vroom | ||
Encoding: UTF-8 | ||
Packaged: 2024-06-21 12:31:42.585143 | ||
Packaged: 2024-10-23 22:59:23.332565 | ||
Roxygen: list(markdown = TRUE) | ||
RoxygenNote: 7.3.1 |
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Original file line number | Diff line number | Diff line change |
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@@ -1,19 +1,21 @@ | ||
# Configuration for the Package | ||
DESCRIPTION <- list( | ||
package.name = "Seurat.utils", | ||
version = "2.8.0", | ||
version = "2.8.5", | ||
title = "Seurat.utils - utility functions for Seurat", | ||
description = "Seurat.utils Is a collection of utility functions for Seurat single cell analysis. | ||
Functions allow 3D plotting, visualisation of statistics & QC, | ||
the automation / multiplexing of plotting, interaction with the Seurat object, etc. | ||
Some functionalities require functions from CodeAndRoll and MarkdownReports libraries.", | ||
depends = "ggplot2, Seurat, Stringendo, CodeAndRoll2, ggExpress, magrittr", | ||
imports = "cowplot, ReadWriter, dplyr, ggcorrplot, ggpubr, ggrepel, grDevices, HGNChelper, | ||
htmlwidgets, MarkdownHelpers, MarkdownReports, Matrix, matrixStats, princurve, pheatmap, | ||
depends = "tidyverse, Seurat, Stringendo, CodeAndRoll2, ggExpress, magrittr", | ||
imports = "cowplot, dplyr, ggcorrplot, ggpubr, ggrepel, HGNChelper, htmlwidgets, | ||
Matrix, matrixStats, princurve, pheatmap, | ||
R.utils, readr, reshape2, scales, SoupX, sparseMatrixStats, stringr, tibble, tictoc, | ||
plotly, rstudioapi, vroom, job, qs, foreach, tidyverse", | ||
suggests = "SoupX, princurve, EnhancedVolcano, DatabaseLinke.R, RColorBrewer, fs, gplots", | ||
|
||
ReadWriter, MarkdownHelpers, MarkdownReports, | ||
plotly, qs, foreach, harmony, EnhancedVolcano, rstudioapi, | ||
RColorBrewer, SeuratObject, checkmate, fs, future, | ||
ggplot2, gplots", # , grDevices | ||
suggests = "clusterProfiler, enrichplot, DatabaseLinke.R, vroom", #, job | ||
author.given = "Abel", | ||
author.family = "Vertesy", | ||
author.email = "[email protected]", | ||
|
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