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Error with organizing output for codeVA #31

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y-chu opened this issue May 3, 2023 · 2 comments
Open

Error with organizing output for codeVA #31

y-chu opened this issue May 3, 2023 · 2 comments

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@y-chu
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y-chu commented May 3, 2023

Hi team,

I ran into the following error for the first time when running InsilicoVA with codeVA (codes as below)

codeVA(input.data
              , data.type = "WHO2016", model = "InSilicoVA"
              , subpop=subpop
              , Nsim=6000, jump.scale=0.2, auto.length = TRUE
              , dir=output.dir)

Pasted Graphic 11

I solved it by increasing Nsim and having smaller jump.scale, but still not fully sure what's the real problem here.
Maybe the error message could be a bit more informative to help with debugging?

Thanks all!

@y-chu y-chu changed the title Error saving output after running codeVA Error with organizing output for codeVA May 3, 2023
@rrwen
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rrwen commented Jan 25, 2024

I am having the same issue running on a ~10K record dataset (nrow=11832, col=354) with Nsim=10000:

image

@rrwen
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rrwen commented Jan 26, 2024

Update to #31 (comment)

It successfully ran when setting Nsim=9500, but took a little over 3 hours.

It seems most of the time was spent trying to re-iterate multiple times:

image

Final iterations:

image

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