T2T Encode epigenetic reanalysis

These scripts will recapitulate the analysis performed for the reanalysis of Encode data using the chm13 reference genome.

Prerequisites:

Snakemake
Python3
Conda
Git

Running the analysis:

First, adjust values in the snakefile to reflect the appropriate specs for your system.

Second, run the snakefile with the --use-conda flag.

Any questions should be directed to [email protected]