From 774acfe58c76b1d50afa07c77be70b6dc10dbbc3 Mon Sep 17 00:00:00 2001 From: drosofff Date: Fri, 19 Jul 2019 18:02:56 +0200 Subject: [PATCH] add metavisitor yaml tool lists (normal and lock) --- metavisitor.yaml | 111 +++++++++++++++++++++++++++++ metavisitor.yaml.lock | 161 ++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 272 insertions(+) create mode 100644 metavisitor.yaml create mode 100644 metavisitor.yaml.lock diff --git a/metavisitor.yaml b/metavisitor.yaml new file mode 100644 index 00000000..52dc1f84 --- /dev/null +++ b/metavisitor.yaml @@ -0,0 +1,111 @@ +--- +install_repository_dependencies: true +install_resolver_dependencies: true +install_tool_dependencies: false + +tools: +- name: blast_to_scaffold + owner: artbio + tool_panel_section_label: Metavisitor + +- name: bowtie2 + owner: devteam + tool_panel_section_label: Metavisitor + +- name: cherry_pick_fasta + owner: artbio + tool_panel_section_label: Metavisitor + +- name: concatenate_multiple_datasets + owner: artbio + tool_panel_section_label: Metavisitor + +- name: data_manager_bowtie2_index_builder + owner: devteam + tool_panel_section_label: null + +- name: data_manager_bowtie_index_builder + owner: iuc + tool_panel_section_label: null + +- name: data_manager_fetch_genome_dbkeys_all_fasta + owner: devteam + tool_panel_section_label: null + +- name: fasta_filter_by_length + owner: devteam + tool_panel_section_label: Metavisitor + +- name: fastx_trimmer + owner: devteam + tool_panel_section_label: Metavisitor + +- name: fetch_fasta_from_ncbi + owner: artbio + tool_panel_section_label: Metavisitor + +- name: khmer_normalize_by_median + owner: iuc + tool_panel_section_label: Metavisitor + +- name: blastparser_and_hits + owner: artbio + tool_panel_section_label: Metavisitor + +- name: cap3 + owner: artbio + tool_panel_section_label: Metavisitor + +- name: sequence_format_converter + owner: artbio + tool_panel_section_label: Metavisitor + +- name: oases + owner: artbio + tool_panel_section_label: Metavisitor + +- name: sr_bowtie + owner: artbio + tool_panel_section_label: Metavisitor + install_resolver_dependencies: True + install_tool_dependencies: False + +- name: small_rna_maps + owner: artbio + tool_panel_section_label: Metavisitor + +- name: ncbi_blast_plus + owner: devteam + tool_panel_section_label: Metavisitor + +- name: regex_find_replace + owner: galaxyp + tool_panel_section_label: Metavisitor + +- name: sra_tools + owner: iuc + tool_panel_section_label: Metavisitor + +- name: trinity + owner: iuc + tool_panel_section_label: Metavisitor + +- name: spades + owner: nml + tool_panel_section_label: Metavisitor + +- name: yac_clipper + owner: artbio + tool_panel_section_label: Metavisitor + +- name: vsearch + owner: iuc + tool_panel_section_label: Metavisitor + +- name: blast_unmatched + owner: artbio + tool_panel_section_label: Metavisitor + +- name: fasta_compute_length + owner: devteam + tool_panel_section_label: Metavisitor diff --git a/metavisitor.yaml.lock b/metavisitor.yaml.lock new file mode 100644 index 00000000..6becf594 --- /dev/null +++ b/metavisitor.yaml.lock @@ -0,0 +1,161 @@ +--- +install_repository_dependencies: true +install_resolver_dependencies: true +install_tool_dependencies: false + +tools: +- name: blast_to_scaffold + owner: artbio + revisions: + - 7d96b28eec49 + tool_panel_section_label: Metavisitor + +- name: bowtie2 + owner: devteam + revisions: + - 017aba02828d + tool_panel_section_label: Metavisitor + +- name: cherry_pick_fasta + owner: artbio + revisions: + - e3aee4ba49c6 + tool_panel_section_label: Metavisitor + +- name: concatenate_multiple_datasets + owner: artbio + revisions: + - 55cf9d9defd1 + tool_panel_section_label: Metavisitor + +- name: data_manager_bowtie2_index_builder + owner: devteam + revisions: + - d1d5feb31804 + tool_panel_section_label: null + +- name: data_manager_bowtie_index_builder + owner: iuc + revisions: + - 86e9af693a33 + tool_panel_section_label: null + +- name: data_manager_fetch_genome_dbkeys_all_fasta + owner: devteam + revisions: + - b1bc53e9bbc5 + tool_panel_section_label: null + +- name: fasta_filter_by_length + owner: devteam + revisions: + - 2fd6033d0e9c + tool_panel_section_label: Metavisitor + +- name: fastx_trimmer + owner: devteam + revisions: + - 547e8d00f11c + tool_panel_section_label: Metavisitor + +- name: fetch_fasta_from_ncbi + owner: artbio + revisions: + - c667d0ee39f5 + tool_panel_section_label: Metavisitor + +- name: khmer_normalize_by_median + owner: iuc + revisions: + - bfd859f04a89 + tool_panel_section_label: Metavisitor + +- name: blastparser_and_hits + owner: artbio + revisions: + - b4c9c085d709 + tool_panel_section_label: Metavisitor + +- name: cap3 + owner: artbio + revisions: + - d76a0d8a9eac + tool_panel_section_label: Metavisitor + +- name: sequence_format_converter + owner: artbio + revisions: + - f1d59113125a + tool_panel_section_label: Metavisitor + +- name: oases + owner: artbio + revisions: + - f7dd852c8f4c + tool_panel_section_label: Metavisitor + +- name: sr_bowtie + owner: artbio + revisions: + - 0281bb245635 + tool_panel_section_label: Metavisitor + +- name: small_rna_maps + owner: artbio + revisions: + - 14adf24603b6 + tool_panel_section_label: Metavisitor + +- name: ncbi_blast_plus + owner: devteam + revisions: + - e25d3acf6e68 + tool_panel_section_label: Metavisitor + +- name: regex_find_replace + owner: galaxyp + revisions: + - 209b7c5ee9d7 + tool_panel_section_label: Metavisitor + +- name: sra_tools + owner: iuc + revisions: + - 1790dcf3c32d + tool_panel_section_label: Metavisitor + +- name: trinity + owner: iuc + revisions: + - c9cfec002f71 + tool_panel_section_label: Metavisitor + +- name: spades + owner: nml + revisions: + - b8d633fbf5f5 + tool_panel_section_label: Metavisitor + +- name: yac_clipper + owner: artbio + revisions: + - f7947c5a18b8 + tool_panel_section_label: Metavisitor + +- name: vsearch + owner: iuc + revisions: + - b3c7199d8786 + tool_panel_section_label: Metavisitor + +- name: blast_unmatched + owner: artbio + revisions: + - fffdb903f2d1 + tool_panel_section_label: Metavisitor + +- name: fasta_compute_length + owner: devteam + revisions: + - de2db1bdfbf8 + tool_panel_section_label: Metavisitor