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.gitignore
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*.nobg*
*.roc
*~
*.swp
*.pyc
.idea
*#
#*
*.bak
.#*
*.log
*.tmp
*.gam
*.sam
*.json
*.bdg
*.obgraph
*.vggraph
.project
*.bed
*.vg
*.txt
*.nodes
*.edges
*.xls
*.narrowPeak
*.cached
*.meme
tests/fimo*
tests/real_data_*
*tmp*
*.intervals
*.obg
*.offsetbasedgraph
*.snarls
*.bg
*.vg
*.snarlgraph
*.fastq
*.bam
*.gam
*.sam
*.fa
*.intervalcollection
*.fastq
*.pickle
*.fasta
*.gz
*.bai
test/obgraph
test/linear_map
graph_peak_caller/dm_test_data
*.bigWig
*.cache
*egg-info
*.peaks
*.subgraphs
benchmarking/fimo_out
vg_graph
*.transfac
*.lm
*.pb
*.vcf
*.tbi
*.pileup
*.r
*.npy
*.png
*.coverage
*.fai*
*.bam*
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2
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4
X
Y
coverage.xml
*.mtx
*node_id_offset
*.obgindex
*fimo*
*.backup
tests/vg
tests/whole_genome
tests/lrc_kir
tests/mhc
*.npz
test_linear_map*
tests/final_peaks
tests/graph_intervals_control
tests/linear_maps
tests/lrc_kir32
tests/logging
tests/mhc_test_data/graph.nobg
tests/mhc_test_data/linear_map*
tests/graph_intervals
linear_maps
tests/chr21
tests/obg
tests/vgdata
tests/not_matching*
tests/matching*
build
dist
benchmarking/figures_tables/index.html
*.fq