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intro.html
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<!DOCTYPE html>
<html>
<head>
<title>Environmental Informatics</title>
<meta charset="utf-8">
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<meta name="date" content="2016-01-20" />
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title: 'Environmental Informatics',
subtitle: 'ESM 296-3W (winter 2016)',
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name: 'Ben Best, Naomi Tague' ,
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<p style="margin-top: 6px; margin-left: -2px;">2016-01-20</p>
</hgroup>
</slide>
<slide class='segue dark nobackground'><hgroup class = 'auto-fadein'><h2>Introduction</h2></hgroup><article id="introduction" class="smaller ">
</article></slide><slide class=''><hgroup><h2>Environmental Informatics</h2></hgroup><article id="environmental-informatics" class="smaller ">
<blockquote>
<p>manipulating information to solve environmental problems</p>
</blockquote>
</article></slide><slide class=''><hgroup><h2>Data Science - Venn</h2></hgroup><article id="data-science---venn" class="smaller ">
<img src='img/DataScience_VennDiagram_DrewConway.png' title='fig:'/><p class='caption'>Source: <a href='http://drewconway.com/zia/2013/3/26/the-data-science-venn-diagram' title=''>The Data Science Venn Diagram — Drew Conway</a></p>
</article></slide><slide class=''><hgroup><h2>Data Science - Sequence</h2></hgroup><article id="data-science---sequence" class="smaller ">
<img src='http://i0.wp.com/flowingdata.com/wp-content/uploads/2009/06/all-fields.png?zoom=2&w=960' title='fig:'/><p class='caption'>Source: <a href='http://benfry.com/phd/' title=''>Computational Information Design - Ben Fry</a></p>
</article></slide><slide class=''><hgroup><h2>Data Science - Sequence for R</h2></hgroup><article id="data-science---sequence-for-r" class="smaller ">
<img src='img/r4ds_data-science.png' title='fig:'/><p class='caption'>Source: <a href='http://r4ds.had.co.nz/intro.html' title=''>R for Data Science - Hadley Wickham</a></p>
</article></slide><slide class=''><hgroup><h2>Motivating example: Ocean Health Index</h2></hgroup><article id="motivating-example-ocean-health-index" class="smaller ">
<ul>
<li><p>previously, one person curating all data & code, a bottleneck to many scientists inputting ideas</p></li>
<li><p>needed to open it up for use internally, eg <a href='https://github.com/ohi-science' title=''>ohi-science</a></p></li>
<li><p>next, make available to whole world, eg <a href='http://ohi-science.org/subcountry/' title=''>subcountry</a></p></li>
<li><p>now see Github + Rmarkdown widely used, eg <span class="octicon octicon-mark-github">
</span> in <a href='http://ucsb-bren.github.io/env-info/refs' title=''>refs</a></p></li>
</ul>
</article></slide><slide class=''><hgroup><h2>Github Workflow</h2></hgroup><article id="github-workflow" class="smaller ">
<p>Each week, you'll <strong>fork</strong> ucsb-bren's repository to your Github user space, <strong>clone</strong> it to your local machine to make changes, before making a <strong>pull request</strong> to turn it in.</p>
<table class = 'rmdtable'>
<tr class="header">
<th align="left"></th>
<th align="left"><span class="octicon octicon-repo">
</span> <code>github.com/ucsb-bren/[repo]</code> <br> (org, web)</th>
<th align="left"><span class="octicon octicon-repo">
</span> <code>github.com/[user]/[repo]</code> <br> (you, web)</th>
<th align="left"><span class="octicon octicon-repo">
</span> <code>~/github/[repo]</code> <br> (you, local)</th>
</tr>
<tr class="odd">
<td align="left"><span class="octicon octicon-arrow-right">
</span></td>
<td align="left"></td>
<td align="left"><span class="octicon octicon-arrow-right">
</span> <a href='https://help.github.com/articles/fork-a-repo' title=''><strong>fork</strong></a> <span class="mega-octicon octicon-repo-forked">
</span></td>
<td align="left"><span class="octicon octicon-arrow-right">
</span> <a href='https://help.github.com/articles/fetching-a-remote' title=''><strong>clone</strong></a> <span class="mega-octicon octicon-cloud-download">
</span></td>
</tr>
<tr class="even">
<td align="left"><span class="octicon octicon-arrow-down">
</span></td>
<td align="left"></td>
<td align="left"></td>
<td align="left"><span class="octicon octicon-arrow-down">
</span> <a href='http://git-scm.com/docs/git-commit' title=''><strong>commit</strong></a> <span class="mega-octicon octicon-git-commit">
</span></td>
</tr>
<tr class="odd">
<td align="left"><span class="octicon octicon-arrow-down">
</span></td>
<td align="left"></td>
<td align="left"></td>
<td align="left"><span class="octicon octicon-arrow-down">
</span> <a href='https://help.github.com/articles/creating-and-deleting-branches-within-your-repository/' title=''><strong>branch</strong></a> <span class="mega-octicon octicon-git-branch">
</span></td>
</tr>
<tr class="even">
<td align="left"><span class="octicon octicon-arrow-left">
</span></td>
<td align="left"><a href='https://help.github.com/articles/merging-a-pull-request' title=''><strong>merge</strong></a> <span class="mega-octicon octicon-git-merge">
</span></td>
<td align="left"><span class="octicon octicon-arrow-left">
</span> <a href='https://help.github.com/articles/creating-a-pull-request/' title=''><strong>pull request</strong></a> <span class="mega-octicon octicon-git-pull-request">
</span></td>
<td align="left"><span class="octicon octicon-arrow-left">
</span> <a href='https://help.github.com/articles/pushing-to-a-remote/' title=''><strong>push</strong></a> <span class="mega-octicon octicon-cloud-upload">
</span></td>
</tr>
</table>
</article></slide><slide class=''><hgroup><h2>Flagology</h2></hgroup><article id="flagology" class="smaller ">
<p>Regularly:</p>
<ul>
<li><p><span class="red2">
red: <strong>Help!</strong></span></p></li>
<li><p><span class="green2">
green: <strong>Ready</strong></span> for next step</p></li>
</ul>
<p>Today for Group Project Discussion:</p>
<ul>
<li><p><span class="yellow2">
yellow: <strong>Individual</strong></span> – name, github username, program</p></li>
<li><p><span class="blue2">
blue: <strong>Project</strong></span> ideas</p></li>
</ul>
</article></slide><slide class=''><hgroup><h2>Feedback</h2></hgroup><article id="feedback" class="smaller ">
<ul>
<li><strong>Forum</strong> at <a href='https://env-info.slack.com' title=''>env-info.slack.com</a> - need to be invited by <span class="cite">@bbest</span></li>
<li><a href='https://goo.gl/forms/mIeOu7Xoaw' title=''><strong>Feedback</strong></a> using Google Forms</li>
<li><a href='https://github.com/ucsb-bren/env-info/issues' title=''><strong>Issues</strong></a> for <code>ucsb-bren/env-info</code></li>
</ul>
</article></slide><slide class='segue dark nobackground'><hgroup class = 'auto-fadein'><h2>Setup</h2></hgroup><article id="setup" class="smaller ">
<p><a href='../setup.html' title=''>setup</a>: install and configure R, Rstudio, Git, Github</p></article></slide>
<slide class="backdrop"></slide>
</slides>
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