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mvpapp.mako
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mvpapp.mako
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<title>MVP Application</title>
<link href="/static/plugins/visualizations/mvpapp/static/css/jquery-ui.min.css" rel="stylesheet">
<link href="/static/plugins/visualizations/mvpapp/static/css/lorikeet.css" rel="stylesheet">
<link href="/static/plugins/visualizations/mvpapp/static/css/datatables.min.css" rel="stylesheet">
<link href="/static/plugins/visualizations/mvpapp/static/css/app.css" rel="stylesheet">
<link href="/static/plugins/visualizations/mvpapp/static/css/msi.css" rel="stylesheet">
<link href="/static/plugins/visualizations/mvpapp/static/css/igv.css" rel="stylesheet">
<link rel="stylesheet" type="text/css" href='https://fonts.googleapis.com/css?family=PT+Sans:400,700'>
<link rel="stylesheet" type="text/css" href='https://fonts.googleapis.com/css?family=Open+Sans'>
<link rel="stylesheet" type="text/css" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css">
</head>
<body>
<!-- Modal for use by all code -->
<div id="master_modal"></div>
<!-- NAVBAR -->
<nav class="navbar navbar-fixed-top">
<div class="container">
<div class="navbar-header">
<a class="navbar-brand" href="#">MVP Viewer<span id="mvp_help" class="glyphicon glyphicon-question-sign" style="padding: 5px"></span><span class="sr-only">Help?</span><span id="mvp_config" class="glyphicon glyphicon-cog" style="padding: 5px"></span></a>
</div>
<div id="user_btns">
<div id="app_btns" class="btn-group" role="group">
<button id="fdr_module" class="btn btn-primary navbar-btn" disabled="disabled" data-toggle="tooltip" data-placement="bottom" title="Distribution of spectral matching identification scores">ID Scores</button>
<button id="score_defaults" class="btn btn-primary navbar-btn" disabled="disabled" data-toggle="tooltip" data-placement="bottom" title="Select identification features for display">ID Features</button>
<button id="scans-to-galaxy" class="btn btn-primary navbar-btn" data-toggle="tooltip" data-placement="bottom" title="Exports list of verified PSMs to active history">Export Scans <span id="scan-count-badge" class="badge">0</span></button>
<button id="clear_scans" class="btn btn-primary navbar-btn" disabled="disabled" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Clears all scans">Clear all Scans</button>
<button id="mvp_full_window" class="btn btn-primary navbar-btn" data-container="body" data-toggle="tooltip" data-placement="bottom" title="Open MVP in a new window."><span class="glyphicon glyphicon-resize-full"></button>
</div>
</div>
</div>
<!--/.nav-collapse -->
</div>
</nav>
<!-- END NAVBAR -->
<!-- Main content -->
<div class="container">
<div id="igvDiv"></div>
<div id="protein_viewer"></div>
<div id="score_default_div"></div>
<div id="progress-div"></div>
<div class="row">
<div class="col-md-12">
<h3 id="dataset_name"></h3>
</div>
</div>
<div class="row" id="overview_row">
<div id="overview_div" class="col-md-12"></div>
</div>
<div class="row">
<div id="score_filter_div" class="col-md-12"></div>
</div>
<div class="row">
<div id="detail_div" class="col-md-12"></div>
</div>
<div class="row">
<div id="lorikeet_zone" class="col-md-12"></div>
</div>
<div id="fdr_div"></div>
</div>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/jquery.min.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/jquery-ui.min.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/igv.js"></script>
<script src="https://cdn.plot.ly/plotly-latest.min.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/jquery.flot.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/jquery.flot.selection.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/excanvas.min.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/internal.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/specview.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/peptide.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/aminoacid.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/ion.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/datatables.min.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/lib/d3.min.js"></script>
<script src="/static/plugins/visualizations/mvpapp/static/js/application.js"></script>
<script>
$(document).ready(function (){
var config = {
dbkey: '${hda.get_metadata().dbkey}',
href: document.location.origin,
dataName: '${hda.name}',
historyID: '${trans.security.encode_id( hda.history_id )}',
datasetID: '${trans.security.encode_id( hda.id )}',
tableRowCount: {
% for table in hda.metadata.table_row_count:
'${table}': ${hda.metadata.table_row_count[table]} ,
% endfor
}
};
MVPApplication.run(config);
});
</script>
</body>
</html>