MrBait v1.1.5

-Bug fix parsing command line options
-Bug fix when sliding window exceeds locus

MrBait v1.1.4

-Added --vcfALT option (changes behavior for building consensus from VCF)
-Fixed bug in VCF parsing when reference is N or gap
-Added --print_loc option
-Fixed issue where XMFA hidden 'chunk' files were not deleted

MrBait v1.1.3

-Bug fix with consensus calling in cases all characters for a column are gap/N, but none individually are higher than threshold (-q) for inclusion in consensus
-Bug fix for reading XMFA files. XMFA parallel reading fixed

MrBait v1.1.2

Various minor changes, including changes to FASTA output format, and fixing of the --print_tr option

MrBait v1.1.0

Added conda install recipe and setuptools configuration for easy installation of MrBait and dependencies. Code NOT compatible with version 1.0.0

MrBait v1.0.0

Initial functional release. I will perform additional benchmarking and optimization, add more input file parsers, and make some general performance changes, but all main functions are generally working.