AllForward.txt

%%%Demographic parameters%%%
demesize=10 //en individus
dimx=20
dimy=10
Xlimit=10//doit etre egal a dimX si un seul habitat
HabitatSlideBegin=0
HabitatSlideEnd=0// si ==0, pas de changement d'habitat
HabitatSlideDepth=0 // si ==0, pas de changement d'habitat
generationnumber=50
AllopatryLast=8000 //in generation

%%%Sampling parameters%%%
DemeSamplingRatio=1.
IndMeanSample=10

%%%Dispersion parameters; one value if same across species, or two values%%%
dispmax=5
mFemale=0.1, 0.000000001
geomFemale=0.1
mMale=0.1
geomMale=0.1
EdgeEffects=true

%%%Reproduction parameters%%%
Swamping=true
fitnessynormal=1.0
fitnessmaladaptation=0.9,1.0	
fitnesshybridfemale=0.3,1.0
fitnesshybridmale=0.3,1.0
fitnessMaladaptMt=1.0 //fitness of the bad strand (habitat 1)
HybridNb=-1 //-1==Infini
AcceptRates=1,1,1,1,1,1,1,1,1
HomogamyAllLoci=false
ChoosyFemale=0.5 //rate of females which starts the couple formation

%%%Markers parameters%%%
MuRate=5e-004
AutLociNumber=20
InterRecombiRate=0.5 //must <= 0.5
IntraRecombiRate=0.5 //must <= 0.5

%%%Simulation parameters%%%
RunNumber=1
MigRatesCorrection=true
Pause=Final
LowHybridBound=50 //ATTENTION, en cas d'invasion, penser a regler
HighHybridBound=0
SamplingSeed=123456

%%%Writing parameters%%%
WriteIdMatrix=false
WriteIdentitiesProba=false
WriteFstHe=false
WriteGenepopFile=false //pop=demes
WriteGenepopIntrog=false //pop=taxa
WriteGenepopOrigin=false //pop= deme, alleles=taxa of origin
WriteGenepopAlsoPreContact=false
WriteIntrogProfile=true
WriteIntrogStats=true
WritePeriod= -10