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Github version broke geom_edge_sf from ggraph #6189

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agila5 opened this issue Nov 18, 2024 · 1 comment · May be fixed by #6190
Open

Github version broke geom_edge_sf from ggraph #6189

agila5 opened this issue Nov 18, 2024 · 1 comment · May be fixed by #6190

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@agila5
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agila5 commented Nov 18, 2024

Starting from v2.2.0, the R package ggraph implemented a set of functions to plot sfnetwork objects (see here for more details). One of these functions is geom_edge_sf() and its corresponding help page lists the following example (which is here run using the CRAN version of ggplot2):

pak::pak(c("ggplot2", "ggraph", "sfnetworks"))
#> ℹ Loading metadata database✔ Loading metadata database ... done
#>  
#> ℹ No downloads are needed
#> ✔ 3 pkgs + 61 deps: kept 49 [7.9s]
library(ggraph)
#> Warning: package 'ggraph' was built under R version 4.3.3
#> Loading required package: ggplot2
#> Warning: package 'ggplot2' was built under R version 4.3.3
library(sfnetworks)
#> Warning: package 'sfnetworks' was built under R version 4.3.3

gr <- sfnetworks::as_sfnetwork(roxel)
ggraph(gr, 'sf') + geom_edge_sf()

Created on 2024-11-18 with reprex v2.0.2

Session info 
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value
#>  version  R version 4.3.1 (2023-06-16 ucrt)
#>  os       Windows 11 x64 (build 22631)
#>  system   x86_64, mingw32
#>  ui       RTerm
#>  language (EN)
#>  collate  English_United Kingdom.utf8
#>  ctype    English_United Kingdom.utf8
#>  tz       Europe/Rome
#>  date     2024-11-18
#>  pandoc   3.2 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package          * version    date (UTC) lib source
#>  abind              1.4-8      2024-09-12 [1] CRAN (R 4.3.1)
#>  cachem             1.1.0      2024-05-16 [1] CRAN (R 4.3.3)
#>  class              7.3-22     2023-05-03 [2] CRAN (R 4.3.1)
#>  classInt           0.4-10     2023-09-05 [1] CRAN (R 4.3.1)
#>  cli                3.6.3.9001 2024-11-18 [1] Github (r-lib/cli@007c388)
#>  colorspace         2.1-1      2024-07-26 [1] CRAN (R 4.3.1)
#>  crayon             1.5.3      2024-06-20 [1] CRAN (R 4.3.3)
#>  curl               5.2.1      2024-03-01 [1] CRAN (R 4.3.3)
#>  DBI                1.2.3      2024-06-02 [1] CRAN (R 4.3.1)
#>  deldir             2.0-4      2024-02-28 [1] CRAN (R 4.3.1)
#>  digest             0.6.37     2024-08-19 [1] CRAN (R 4.3.1)
#>  dplyr              1.1.4      2023-11-17 [1] CRAN (R 4.3.1)
#>  e1071              1.7-16     2024-09-16 [1] CRAN (R 4.3.1)
#>  evaluate           0.24.0     2024-06-10 [1] CRAN (R 4.3.3)
#>  fansi              1.0.6      2023-12-08 [1] CRAN (R 4.3.2)
#>  farver             2.1.2      2024-05-13 [1] CRAN (R 4.3.1)
#>  fastmap            1.2.0      2024-05-15 [1] CRAN (R 4.3.3)
#>  fs                 1.6.4      2024-04-25 [1] CRAN (R 4.3.3)
#>  generics           0.1.3      2022-07-05 [1] CRAN (R 4.3.1)
#>  ggforce            0.4.2      2024-02-19 [1] CRAN (R 4.3.3)
#>  ggplot2          * 3.5.1      2024-04-23 [1] CRAN (R 4.3.3)
#>  ggraph           * 2.2.1      2024-03-07 [1] CRAN (R 4.3.3)
#>  ggrepel            0.9.4      2023-10-13 [1] CRAN (R 4.3.1)
#>  glue               1.8.0      2024-09-30 [1] CRAN (R 4.3.1)
#>  goftest            1.2-3      2021-10-07 [1] CRAN (R 4.3.1)
#>  graphlayouts       1.1.1      2024-03-09 [1] CRAN (R 4.3.3)
#>  gridExtra          2.3        2017-09-09 [1] CRAN (R 4.3.1)
#>  gtable             0.3.6      2024-10-25 [1] CRAN (R 4.3.1)
#>  highr              0.11       2024-05-26 [1] CRAN (R 4.3.3)
#>  htmltools          0.5.8.1    2024-04-04 [1] CRAN (R 4.3.3)
#>  igraph             2.1.1      2024-10-19 [1] CRAN (R 4.3.1)
#>  KernSmooth         2.23-21    2023-05-03 [2] CRAN (R 4.3.1)
#>  knitr              1.48       2024-07-07 [1] CRAN (R 4.3.1)
#>  lattice            0.21-8     2023-04-05 [2] CRAN (R 4.3.1)
#>  lifecycle          1.0.4      2023-11-07 [1] CRAN (R 4.3.2)
#>  lwgeom             0.2-14     2024-02-21 [1] CRAN (R 4.3.1)
#>  magrittr           2.0.3      2022-03-30 [1] CRAN (R 4.3.1)
#>  MASS               7.3-60     2023-05-04 [2] CRAN (R 4.3.1)
#>  Matrix             1.6-1.1    2023-09-18 [1] CRAN (R 4.3.1)
#>  memoise            2.0.1      2021-11-26 [1] CRAN (R 4.3.1)
#>  mgcv               1.9-1      2023-12-21 [1] CRAN (R 4.3.1)
#>  munsell            0.5.1      2024-04-01 [1] CRAN (R 4.3.3)
#>  nlme               3.1-162    2023-01-31 [2] CRAN (R 4.3.1)
#>  pak                0.7.2      2024-03-17 [1] CRAN (R 4.3.3)
#>  pillar             1.9.0      2023-03-22 [1] CRAN (R 4.3.1)
#>  pkgconfig          2.0.3      2019-09-22 [1] CRAN (R 4.3.1)
#>  polyclip           1.10-7     2024-07-23 [1] CRAN (R 4.3.1)
#>  proxy              0.4-27     2022-06-09 [1] CRAN (R 4.3.1)
#>  purrr              1.0.2      2023-08-10 [1] CRAN (R 4.3.1)
#>  R.cache            0.16.0     2022-07-21 [1] CRAN (R 4.3.1)
#>  R.methodsS3        1.8.2      2022-06-13 [1] CRAN (R 4.3.1)
#>  R.oo               1.25.0     2022-06-12 [1] CRAN (R 4.3.1)
#>  R.utils            2.12.2     2022-11-11 [1] CRAN (R 4.3.1)
#>  R6                 2.5.1      2021-08-19 [1] CRAN (R 4.3.1)
#>  Rcpp               1.0.13     2024-07-17 [1] CRAN (R 4.3.1)
#>  reprex             2.0.2      2022-08-17 [1] CRAN (R 4.3.1)
#>  rlang              1.1.4      2024-06-04 [1] CRAN (R 4.3.1)
#>  rmarkdown          2.28       2024-08-17 [1] CRAN (R 4.3.1)
#>  rpart              4.1.19     2022-10-21 [2] CRAN (R 4.3.1)
#>  rstudioapi         0.16.0     2024-03-24 [1] CRAN (R 4.3.1)
#>  s2                 1.1.6      2024-02-05 [1] Github (r-spatial/s2@ff89074)
#>  scales             1.3.0      2023-11-28 [1] CRAN (R 4.3.1)
#>  sessioninfo        1.2.2      2021-12-06 [1] CRAN (R 4.3.1)
#>  sf                 1.0-19     2024-11-05 [1] CRAN (R 4.3.1)
#>  sfheaders          0.4.4      2024-01-17 [1] CRAN (R 4.3.3)
#>  sfnetworks       * 0.6.4      2024-04-09 [1] CRAN (R 4.3.3)
#>  spatstat.data      3.1-2      2024-06-21 [1] CRAN (R 4.3.1)
#>  spatstat.explore   3.3-2      2024-08-21 [1] CRAN (R 4.3.1)
#>  spatstat.geom      3.3-3      2024-09-18 [1] CRAN (R 4.3.1)
#>  spatstat.linnet    3.2-2      2024-09-20 [1] CRAN (R 4.3.1)
#>  spatstat.model     3.3-2      2024-09-19 [1] CRAN (R 4.3.1)
#>  spatstat.random    3.3-2      2024-09-18 [1] CRAN (R 4.3.1)
#>  spatstat.sparse    3.1-0      2024-06-21 [1] CRAN (R 4.3.1)
#>  spatstat.univar    3.0-1      2024-09-05 [1] CRAN (R 4.3.1)
#>  spatstat.utils     3.1-0      2024-08-17 [1] CRAN (R 4.3.1)
#>  styler             1.10.2     2023-08-29 [1] CRAN (R 4.3.1)
#>  tensor             1.5        2012-05-05 [1] CRAN (R 4.3.1)
#>  tibble             3.2.1      2023-03-20 [1] CRAN (R 4.3.1)
#>  tidygraph          1.3.1      2024-01-30 [1] CRAN (R 4.3.1)
#>  tidyr              1.3.0      2023-01-24 [1] CRAN (R 4.3.1)
#>  tidyselect         1.2.0      2022-10-10 [1] CRAN (R 4.3.1)
#>  tweenr             2.0.3      2024-02-26 [1] CRAN (R 4.3.3)
#>  units              0.8-5.4    2024-06-03 [1] local
#>  utf8               1.2.4      2023-10-22 [1] CRAN (R 4.3.1)
#>  vctrs              0.6.5      2023-12-01 [1] CRAN (R 4.3.2)
#>  viridis            0.6.4      2023-07-22 [1] CRAN (R 4.3.1)
#>  viridisLite        0.4.2      2023-05-02 [1] CRAN (R 4.3.1)
#>  withr              3.0.2      2024-10-28 [1] CRAN (R 4.3.1)
#>  wk                 0.9.3      2024-09-06 [1] CRAN (R 4.3.1)
#>  xfun               0.45       2024-06-16 [1] CRAN (R 4.3.3)
#>  xml2               1.3.6      2023-12-04 [1] CRAN (R 4.3.2)
#>  yaml               2.3.9      2024-07-05 [1] CRAN (R 4.3.3)
#> 
#>  [1] C:/Users/user/AppData/Local/R/win-library/4.3
#>  [2] C:/Program Files/R/R-4.3.1/library
#> 
#> ──────────────────────────────────────────────────────────────────────────────

However, when I run the same code using the Github version of ggplot2 I get an error:

pak::pak(c("tidyverse/ggplot2"))
#> ℹ Loading metadata database✔ Loading metadata database ... done
#>  
#> → Will update 1 package.
#> → Will download 1 package with unknown size.
#> + ggplot2 3.5.1 → 3.5.1.9000 [bld][cmp][dl] (GitHub: f468053)
#> ℹ Getting 1 pkg with unknown size
#> ✔ Cached copy of ggplot2 3.5.1.9000 (source) is the latest build
#> ✔ Installed ggplot2 3.5.1.9000 (github::tidyverse/ggplot2@f468053) (168ms)
#> ✔ 1 pkg + 16 deps: kept 16, upd 1 [6.8s]
library(ggraph)
#> Warning: package 'ggraph' was built under R version 4.3.3
#> Loading required package: ggplot2
library(sfnetworks)
#> Warning: package 'sfnetworks' was built under R version 4.3.3

gr <- sfnetworks::as_sfnetwork(roxel)
ggraph(gr, 'sf') + geom_edge_sf()
#> Error in `geom_edge_sf()`:
#> ! Problem while converting geom to grob.
#> ℹ Error occurred in the 1st layer.
#> Caused by error in `check.length()`:
#> ! 'gpar' element 'fontsize' must not be length 0
#> Backtrace:
#>      ▆
#>   1. ├─base::tryCatch(...)
#>   2. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
#>   3. │   ├─base (local) tryCatchOne(...)
#>   4. │   │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
#>   5. │   └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
#>   6. │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
#>   7. │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
#>   8. ├─base::withCallingHandlers(...)
#>   9. ├─base::saveRDS(...)
#>  10. ├─base::do.call(...)
#>  11. ├─base (local) `<fn>`(...)
#>  12. ├─global `<fn>`(input = base::quote("awful-dog_reprex.R"))
#>  13. │ └─rmarkdown::render(input, quiet = TRUE, envir = globalenv(), encoding = "UTF-8")
#>  14. │   └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
#>  15. │     └─knitr:::process_file(text, output)
#>  16. │       ├─xfun:::handle_error(...)
#>  17. │       ├─base::withCallingHandlers(...)
#>  18. │       └─knitr:::process_group(group)
#>  19. │         └─knitr:::call_block(x)
#>  20. │           └─knitr:::block_exec(params)
#>  21. │             └─knitr:::eng_r(options)
#>  22. │               ├─knitr:::in_input_dir(...)
#>  23. │               │ └─knitr:::in_dir(input_dir(), expr)
#>  24. │               └─knitr (local) evaluate(...)
#>  25. │                 └─evaluate::evaluate(...)
#>  26. │                   └─evaluate:::evaluate_call(...)
#>  27. │                     ├─evaluate (local) handle(...)
#>  28. │                     │ └─base::try(f, silent = TRUE)
#>  29. │                     │   └─base::tryCatch(...)
#>  30. │                     │     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
#>  31. │                     │       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
#>  32. │                     │         └─base (local) doTryCatch(return(expr), name, parentenv, handler)
#>  33. │                     ├─base::withCallingHandlers(...)
#>  34. │                     ├─base::withVisible(value_fun(ev$value, ev$visible))
#>  35. │                     └─knitr (local) value_fun(ev$value, ev$visible)
#>  36. │                       └─knitr (local) fun(x, options = options)
#>  37. │                         ├─base::withVisible(knit_print(x, ...))
#>  38. │                         ├─knitr::knit_print(x, ...)
#>  39. │                         └─knitr:::knit_print.default(x, ...)
#>  40. │                           └─evaluate (local) normal_print(x)
#>  41. │                             ├─base::print(x)
#>  42. │                             └─ggplot2:::print.ggplot(x)
#>  43. │                               ├─ggplot2::ggplot_gtable(data)
#>  44. │                               └─ggplot2:::ggplot_gtable.ggplot_built(data)
#>  45. │                                 └─ggplot2:::by_layer(...)
#>  46. │                                   ├─rlang::try_fetch(...)
#>  47. │                                   │ ├─base::tryCatch(...)
#>  48. │                                   │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
#>  49. │                                   │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
#>  50. │                                   │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
#>  51. │                                   │ └─base::withCallingHandlers(...)
#>  52. │                                   └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
#>  53. │                                     └─l$draw_geom(d, layout)
#>  54. │                                       └─ggplot2 (local) draw_geom(..., self = self)
#>  55. │                                         └─self$geom$draw_layer(...)
#>  56. │                                           └─ggplot2 (local) draw_layer(..., self = self)
#>  57. │                                             └─base::lapply(...)
#>  58. │                                               └─ggplot2 (local) FUN(X[[i]], ...)
#>  59. │                                                 ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
#>  60. │                                                 └─self$draw_panel(data, panel_params, coord)
#>  61. │                                                   └─ggraph (local) draw_panel(...)
#>  62. │                                                     └─GeomSf$draw_panel(data, panel_params, coords)
#>  63. │                                                       └─ggplot2 (local) draw_panel(..., self = self)
#>  64. │                                                         └─grid::gpar(...)
#>  65. │                                                           └─grid:::validGP(list(...))
#>  66. │                                                             └─grid (local) numnotnull("fontsize")
#>  67. │                                                               └─grid (local) check.length(gparname)
#>  68. │                                                                 └─base::stop(...)
#>  69. └─base::.handleSimpleError(...)
#>  70.   └─rlang (local) h(simpleError(msg, call))
#>  71.     └─handlers[[1L]](cnd)
#>  72.       └─cli::cli_abort(...)
#>  73.         └─rlang::abort(...)

Created on 2024-11-18 with reprex v2.0.2

Session info 
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value
#>  version  R version 4.3.1 (2023-06-16 ucrt)
#>  os       Windows 11 x64 (build 22631)
#>  system   x86_64, mingw32
#>  ui       RTerm
#>  language (EN)
#>  collate  English_United Kingdom.utf8
#>  ctype    English_United Kingdom.utf8
#>  tz       Europe/Rome
#>  date     2024-11-18
#>  pandoc   3.2 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package          * version    date (UTC) lib source
#>  abind              1.4-8      2024-09-12 [1] CRAN (R 4.3.1)
#>  cachem             1.1.0      2024-05-16 [1] CRAN (R 4.3.3)
#>  class              7.3-22     2023-05-03 [2] CRAN (R 4.3.1)
#>  classInt           0.4-10     2023-09-05 [1] CRAN (R 4.3.1)
#>  cli                3.6.3.9001 2024-11-18 [1] Github (r-lib/cli@007c388)
#>  colorspace         2.1-1      2024-07-26 [1] CRAN (R 4.3.1)
#>  crayon             1.5.3      2024-06-20 [1] CRAN (R 4.3.3)
#>  DBI                1.2.3      2024-06-02 [1] CRAN (R 4.3.1)
#>  deldir             2.0-4      2024-02-28 [1] CRAN (R 4.3.1)
#>  digest             0.6.37     2024-08-19 [1] CRAN (R 4.3.1)
#>  dplyr              1.1.4      2023-11-17 [1] CRAN (R 4.3.1)
#>  e1071              1.7-16     2024-09-16 [1] CRAN (R 4.3.1)
#>  evaluate           0.24.0     2024-06-10 [1] CRAN (R 4.3.3)
#>  fansi              1.0.6      2023-12-08 [1] CRAN (R 4.3.2)
#>  farver             2.1.2      2024-05-13 [1] CRAN (R 4.3.1)
#>  fastmap            1.2.0      2024-05-15 [1] CRAN (R 4.3.3)
#>  fs                 1.6.4      2024-04-25 [1] CRAN (R 4.3.3)
#>  generics           0.1.3      2022-07-05 [1] CRAN (R 4.3.1)
#>  ggforce            0.4.2      2024-02-19 [1] CRAN (R 4.3.3)
#>  ggplot2          * 3.5.1.9000 2024-11-13 [1] Github (tidyverse/ggplot2@f468053)
#>  ggraph           * 2.2.1      2024-03-07 [1] CRAN (R 4.3.3)
#>  ggrepel            0.9.4      2023-10-13 [1] CRAN (R 4.3.1)
#>  glue               1.8.0      2024-09-30 [1] CRAN (R 4.3.1)
#>  goftest            1.2-3      2021-10-07 [1] CRAN (R 4.3.1)
#>  graphlayouts       1.1.1      2024-03-09 [1] CRAN (R 4.3.3)
#>  gridExtra          2.3        2017-09-09 [1] CRAN (R 4.3.1)
#>  gtable             0.3.6      2024-10-25 [1] CRAN (R 4.3.1)
#>  htmltools          0.5.8.1    2024-04-04 [1] CRAN (R 4.3.3)
#>  igraph             2.1.1      2024-10-19 [1] CRAN (R 4.3.1)
#>  KernSmooth         2.23-21    2023-05-03 [2] CRAN (R 4.3.1)
#>  knitr              1.48       2024-07-07 [1] CRAN (R 4.3.1)
#>  lattice            0.21-8     2023-04-05 [2] CRAN (R 4.3.1)
#>  lifecycle          1.0.4      2023-11-07 [1] CRAN (R 4.3.2)
#>  lwgeom             0.2-14     2024-02-21 [1] CRAN (R 4.3.1)
#>  magrittr           2.0.3      2022-03-30 [1] CRAN (R 4.3.1)
#>  MASS               7.3-60     2023-05-04 [2] CRAN (R 4.3.1)
#>  Matrix             1.6-1.1    2023-09-18 [1] CRAN (R 4.3.1)
#>  memoise            2.0.1      2021-11-26 [1] CRAN (R 4.3.1)
#>  mgcv               1.9-1      2023-12-21 [1] CRAN (R 4.3.1)
#>  munsell            0.5.1      2024-04-01 [1] CRAN (R 4.3.3)
#>  nlme               3.1-162    2023-01-31 [2] CRAN (R 4.3.1)
#>  pak                0.7.2      2024-03-17 [1] CRAN (R 4.3.3)
#>  pillar             1.9.0      2023-03-22 [1] CRAN (R 4.3.1)
#>  pkgconfig          2.0.3      2019-09-22 [1] CRAN (R 4.3.1)
#>  polyclip           1.10-7     2024-07-23 [1] CRAN (R 4.3.1)
#>  proxy              0.4-27     2022-06-09 [1] CRAN (R 4.3.1)
#>  purrr              1.0.2      2023-08-10 [1] CRAN (R 4.3.1)
#>  R.cache            0.16.0     2022-07-21 [1] CRAN (R 4.3.1)
#>  R.methodsS3        1.8.2      2022-06-13 [1] CRAN (R 4.3.1)
#>  R.oo               1.25.0     2022-06-12 [1] CRAN (R 4.3.1)
#>  R.utils            2.12.2     2022-11-11 [1] CRAN (R 4.3.1)
#>  R6                 2.5.1      2021-08-19 [1] CRAN (R 4.3.1)
#>  Rcpp               1.0.13     2024-07-17 [1] CRAN (R 4.3.1)
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#>  styler             1.10.2     2023-08-29 [1] CRAN (R 4.3.1)
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#>  [1] C:/Users/user/AppData/Local/R/win-library/4.3
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#> 
#> ──────────────────────────────────────────────────────────────────────────────

I run a git bisect and I guess that this is the breaking PR 744e021 but, unfortunately, I don't know how to fix it 😅
@teunbrand
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teunbrand commented Nov 19, 2024 •
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Thanks for the report!
I can confirm this is a bug.
My number 1 subspect for this is that GeomEdgeSf does not have a default for stroke.
However, perhaps ggplot2 should defensively code against such a case.

@teunbrand teunbrand linked a pull request Nov 19, 2024 that will close this issue
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@agila5 agila5 mentioned this issue Nov 19, 2024
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Fix regression in geom_sf() teunbrand/ggplot2
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@agila5 @teunbrand