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IMHO, it'd be better to give each function it's own file (based on name, not name+args). That means an upgrade script would be essentially a bunch of \i's, and could probably be generated dynamically based on a git diff.
Will you be agree to split the huge pgtap.sql.in in some smaller parts ?
It could be done with few impact,
It will help a lot to maintain it over time and had new functionnalities
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